Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Trim54Q9ERP3 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC17.64■□□□□ 0.41
Trim54Q9ERP3 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim54Q9ERP3 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim54Q9ERP3 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trim54Q9ERP3 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC17.64■□□□□ 0.41
Trim54Q9ERP3 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Trim54Q9ERP3 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Trim54Q9ERP3 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC17.64■□□□□ 0.41
Trim54Q9ERP3 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim54Q9ERP3 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim54Q9ERP3 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trim54Q9ERP3 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trim54Q9ERP3 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trim54Q9ERP3 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim54Q9ERP3 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim54Q9ERP3 Gm7862-201ENSMUST00000121461 292 ntBASIC17.63■□□□□ 0.41
Trim54Q9ERP3 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim54Q9ERP3 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC17.63■□□□□ 0.41
Trim54Q9ERP3 Gm13830-205ENSMUST00000201195 1155 ntBASIC17.63■□□□□ 0.41
Trim54Q9ERP3 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Trim54Q9ERP3 Gm9449-201ENSMUST00000207265 1011 ntBASIC17.63■□□□□ 0.41
Trim54Q9ERP3 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Trim54Q9ERP3 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim54Q9ERP3 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim54Q9ERP3 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC17.63■□□□□ 0.41
Trim54Q9ERP3 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim54Q9ERP3 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim54Q9ERP3 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim54Q9ERP3 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim54Q9ERP3 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Trim54Q9ERP3 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim54Q9ERP3 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trim54Q9ERP3 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trim54Q9ERP3 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim54Q9ERP3 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim54Q9ERP3 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trim54Q9ERP3 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Trim54Q9ERP3 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Trim54Q9ERP3 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Trim54Q9ERP3 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim54Q9ERP3 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC17.62■□□□□ 0.41
Trim54Q9ERP3 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim54Q9ERP3 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim54Q9ERP3 Gm25745-201ENSMUST00000174945 133 ntBASIC17.62■□□□□ 0.41
Trim54Q9ERP3 Gm2651-201ENSMUST00000203560 838 ntBASIC17.62■□□□□ 0.41
Trim54Q9ERP3 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim54Q9ERP3 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trim54Q9ERP3 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim54Q9ERP3 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC17.62■□□□□ 0.41
Trim54Q9ERP3 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim54Q9ERP3 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim54Q9ERP3 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim54Q9ERP3 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim54Q9ERP3 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim54Q9ERP3 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC17.62■□□□□ 0.41
Trim54Q9ERP3 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trim54Q9ERP3 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim54Q9ERP3 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Trim54Q9ERP3 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trim54Q9ERP3 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim54Q9ERP3 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC17.61■□□□□ 0.41
Trim54Q9ERP3 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim54Q9ERP3 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim54Q9ERP3 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC17.61■□□□□ 0.41
Trim54Q9ERP3 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim54Q9ERP3 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim54Q9ERP3 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trim54Q9ERP3 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trim54Q9ERP3 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim54Q9ERP3 AC114585.2-202ENSMUST00000228094 426 ntBASIC17.61■□□□□ 0.41
Trim54Q9ERP3 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim54Q9ERP3 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim54Q9ERP3 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Trim54Q9ERP3 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim54Q9ERP3 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim54Q9ERP3 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim54Q9ERP3 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim54Q9ERP3 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim54Q9ERP3 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim54Q9ERP3 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim54Q9ERP3 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim54Q9ERP3 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim54Q9ERP3 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim54Q9ERP3 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim54Q9ERP3 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trim54Q9ERP3 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trim54Q9ERP3 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim54Q9ERP3 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim54Q9ERP3 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim54Q9ERP3 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim54Q9ERP3 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trim54Q9ERP3 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim54Q9ERP3 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim54Q9ERP3 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim54Q9ERP3 Gm18856-201ENSMUST00000178096 1374 ntBASIC17.6■□□□□ 0.41
Trim54Q9ERP3 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim54Q9ERP3 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trim54Q9ERP3 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim54Q9ERP3 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC17.6■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 40.6 ms