Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Lima1Q9ERG0 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC16.16■□□□□ 0.18
Lima1Q9ERG0 Gm38027-201ENSMUST00000192315 235 ntBASIC16.16■□□□□ 0.18
Lima1Q9ERG0 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Lima1Q9ERG0 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Lima1Q9ERG0 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Lima1Q9ERG0 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Lima1Q9ERG0 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC16.16■□□□□ 0.18
Lima1Q9ERG0 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC16.16■□□□□ 0.18
Lima1Q9ERG0 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Lima1Q9ERG0 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Lima1Q9ERG0 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Lima1Q9ERG0 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Lima1Q9ERG0 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Lima1Q9ERG0 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Lima1Q9ERG0 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Lima1Q9ERG0 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Lima1Q9ERG0 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Lima1Q9ERG0 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Lima1Q9ERG0 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Lima1Q9ERG0 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Lima1Q9ERG0 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Lima1Q9ERG0 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC16.15■□□□□ 0.18
Lima1Q9ERG0 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Lima1Q9ERG0 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Lima1Q9ERG0 Gm17661-201ENSMUST00000170317 270 ntBASIC16.15■□□□□ 0.18
Lima1Q9ERG0 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
Lima1Q9ERG0 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Lima1Q9ERG0 Timm23-208ENSMUST00000226683 750 ntBASIC16.15■□□□□ 0.18
Lima1Q9ERG0 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Lima1Q9ERG0 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Lima1Q9ERG0 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC16.15■□□□□ 0.18
Lima1Q9ERG0 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Lima1Q9ERG0 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Lima1Q9ERG0 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Lima1Q9ERG0 Zkscan3-208ENSMUST00000224820 5398 ntBASIC16.15■□□□□ 0.18
Lima1Q9ERG0 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Lima1Q9ERG0 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
Lima1Q9ERG0 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Lima1Q9ERG0 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Lima1Q9ERG0 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Lima1Q9ERG0 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Lima1Q9ERG0 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Lima1Q9ERG0 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Lima1Q9ERG0 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC16.14■□□□□ 0.17
Lima1Q9ERG0 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
Lima1Q9ERG0 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Lima1Q9ERG0 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
Lima1Q9ERG0 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC16.14■□□□□ 0.17
Lima1Q9ERG0 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC16.14■□□□□ 0.17
Lima1Q9ERG0 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Lima1Q9ERG0 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Lima1Q9ERG0 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Lima1Q9ERG0 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Lima1Q9ERG0 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Lima1Q9ERG0 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC16.14■□□□□ 0.17
Lima1Q9ERG0 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Lima1Q9ERG0 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Lima1Q9ERG0 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Lima1Q9ERG0 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Lima1Q9ERG0 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
Lima1Q9ERG0 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Lima1Q9ERG0 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Lima1Q9ERG0 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Lima1Q9ERG0 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Lima1Q9ERG0 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Lima1Q9ERG0 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Lima1Q9ERG0 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Lima1Q9ERG0 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Lima1Q9ERG0 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Lima1Q9ERG0 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
Lima1Q9ERG0 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Lima1Q9ERG0 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Lima1Q9ERG0 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Lima1Q9ERG0 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Lima1Q9ERG0 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
Lima1Q9ERG0 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Lima1Q9ERG0 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC16.13■□□□□ 0.17
Lima1Q9ERG0 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC16.13■□□□□ 0.17
Lima1Q9ERG0 Odf3b-204ENSMUST00000227834 930 ntBASIC16.13■□□□□ 0.17
Lima1Q9ERG0 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Lima1Q9ERG0 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Lima1Q9ERG0 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
Lima1Q9ERG0 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Lima1Q9ERG0 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Lima1Q9ERG0 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Lima1Q9ERG0 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Lima1Q9ERG0 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Lima1Q9ERG0 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Lima1Q9ERG0 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Lima1Q9ERG0 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Lima1Q9ERG0 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC16.12■□□□□ 0.17
Lima1Q9ERG0 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC16.12■□□□□ 0.17
Lima1Q9ERG0 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Lima1Q9ERG0 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Lima1Q9ERG0 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC16.12■□□□□ 0.17
Lima1Q9ERG0 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC16.12■□□□□ 0.17
Lima1Q9ERG0 Arhgef33-211ENSMUST00000225658 473 ntBASIC16.12■□□□□ 0.17
Lima1Q9ERG0 AC156016.1-201ENSMUST00000227190 1035 ntBASIC16.12■□□□□ 0.17
Lima1Q9ERG0 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms