Protein–RNA interactions for Protein: Q9CQE8

RTRAF, RNA transcription, translation and transport factor protein, mousemouse

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTRAFQ9CQE8 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
RTRAFQ9CQE8 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RTRAFQ9CQE8 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RTRAFQ9CQE8 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
RTRAFQ9CQE8 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
RTRAFQ9CQE8 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
RTRAFQ9CQE8 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RTRAFQ9CQE8 Prob1-201ENSMUST00000097619 3021 ntBASIC13.35□□□□□ -0.27
RTRAFQ9CQE8 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
RTRAFQ9CQE8 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RTRAFQ9CQE8 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RTRAFQ9CQE8 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RTRAFQ9CQE8 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RTRAFQ9CQE8 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
RTRAFQ9CQE8 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 Ap3s1-204ENSMUST00000225520 957 ntBASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 Gm29340-201ENSMUST00000188763 3854 ntBASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
RTRAFQ9CQE8 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
RTRAFQ9CQE8 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC13.33□□□□□ -0.27
RTRAFQ9CQE8 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.27
RTRAFQ9CQE8 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RTRAFQ9CQE8 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC13.33□□□□□ -0.28
RTRAFQ9CQE8 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC13.33□□□□□ -0.28
RTRAFQ9CQE8 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
RTRAFQ9CQE8 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
RTRAFQ9CQE8 Mir2861-201ENSMUST00000175539 82 ntBASIC13.33□□□□□ -0.28
RTRAFQ9CQE8 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC13.33□□□□□ -0.28
RTRAFQ9CQE8 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RTRAFQ9CQE8 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
RTRAFQ9CQE8 Zfp783-201ENSMUST00000095946 670 ntBASIC13.33□□□□□ -0.28
RTRAFQ9CQE8 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
RTRAFQ9CQE8 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
RTRAFQ9CQE8 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
RTRAFQ9CQE8 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
RTRAFQ9CQE8 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC13.33□□□□□ -0.28
RTRAFQ9CQE8 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
RTRAFQ9CQE8 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RTRAFQ9CQE8 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
RTRAFQ9CQE8 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
RTRAFQ9CQE8 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RTRAFQ9CQE8 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC13.32□□□□□ -0.28
RTRAFQ9CQE8 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RTRAFQ9CQE8 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
RTRAFQ9CQE8 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RTRAFQ9CQE8 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC13.32□□□□□ -0.28
RTRAFQ9CQE8 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
RTRAFQ9CQE8 Pcgf5-211ENSMUST00000225920 6443 ntBASIC13.32□□□□□ -0.28
RTRAFQ9CQE8 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RTRAFQ9CQE8 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RTRAFQ9CQE8 AC115863.1-201ENSMUST00000214815 1813 ntBASIC13.32□□□□□ -0.28
RTRAFQ9CQE8 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RTRAFQ9CQE8 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
RTRAFQ9CQE8 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RTRAFQ9CQE8 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RTRAFQ9CQE8 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
RTRAFQ9CQE8 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RTRAFQ9CQE8 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RTRAFQ9CQE8 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RTRAFQ9CQE8 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC13.32□□□□□ -0.28
RTRAFQ9CQE8 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC13.32□□□□□ -0.28
RTRAFQ9CQE8 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
RTRAFQ9CQE8 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
RTRAFQ9CQE8 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RTRAFQ9CQE8 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RTRAFQ9CQE8 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
RTRAFQ9CQE8 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RTRAFQ9CQE8 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RTRAFQ9CQE8 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RTRAFQ9CQE8 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC13.32□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 55.3 ms