Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lsm1Q8VC85 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lsm1Q8VC85 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
Lsm1Q8VC85 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lsm1Q8VC85 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lsm1Q8VC85 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lsm1Q8VC85 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC15.67■□□□□ 0.1
Lsm1Q8VC85 Gm3272-201ENSMUST00000181181 1229 ntBASIC15.67■□□□□ 0.1
Lsm1Q8VC85 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Lsm1Q8VC85 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lsm1Q8VC85 Gm10566-201ENSMUST00000086739 996 ntBASIC15.67■□□□□ 0.1
Lsm1Q8VC85 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lsm1Q8VC85 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lsm1Q8VC85 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lsm1Q8VC85 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lsm1Q8VC85 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Lsm1Q8VC85 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Lsm1Q8VC85 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lsm1Q8VC85 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lsm1Q8VC85 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lsm1Q8VC85 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lsm1Q8VC85 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lsm1Q8VC85 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Lsm1Q8VC85 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lsm1Q8VC85 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lsm1Q8VC85 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lsm1Q8VC85 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lsm1Q8VC85 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Lsm1Q8VC85 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Lsm1Q8VC85 Gm14464-201ENSMUST00000119658 1254 ntBASIC15.66■□□□□ 0.1
Lsm1Q8VC85 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lsm1Q8VC85 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Lsm1Q8VC85 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Lsm1Q8VC85 Gm7213-201ENSMUST00000215977 950 ntBASIC15.66■□□□□ 0.1
Lsm1Q8VC85 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC15.66■□□□□ 0.1
Lsm1Q8VC85 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lsm1Q8VC85 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lsm1Q8VC85 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lsm1Q8VC85 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Lsm1Q8VC85 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Lsm1Q8VC85 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lsm1Q8VC85 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Lsm1Q8VC85 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Lsm1Q8VC85 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lsm1Q8VC85 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Lsm1Q8VC85 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Gm13436-201ENSMUST00000120418 567 ntBASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Gm37055-201ENSMUST00000191866 133 ntBASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lsm1Q8VC85 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
Lsm1Q8VC85 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Lsm1Q8VC85 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
Lsm1Q8VC85 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Lsm1Q8VC85 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Lsm1Q8VC85 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Lsm1Q8VC85 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC15.64■□□□□ 0.09
Lsm1Q8VC85 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC15.64■□□□□ 0.09
Lsm1Q8VC85 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Lsm1Q8VC85 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Lsm1Q8VC85 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC15.64■□□□□ 0.09
Lsm1Q8VC85 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Lsm1Q8VC85 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Lsm1Q8VC85 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Lsm1Q8VC85 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Lsm1Q8VC85 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Lsm1Q8VC85 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Lsm1Q8VC85 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Lsm1Q8VC85 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Lsm1Q8VC85 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Lsm1Q8VC85 CT010478.1-201ENSMUST00000220747 2787 ntBASIC15.64■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms