Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Brf1Q8CFK2 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC19.74■□□□□ 0.75
Brf1Q8CFK2 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC19.74■□□□□ 0.75
Brf1Q8CFK2 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC19.74■□□□□ 0.75
Brf1Q8CFK2 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Brf1Q8CFK2 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Brf1Q8CFK2 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Brf1Q8CFK2 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Brf1Q8CFK2 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Brf1Q8CFK2 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Brf1Q8CFK2 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Brf1Q8CFK2 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Brf1Q8CFK2 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Brf1Q8CFK2 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Brf1Q8CFK2 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC19.73■□□□□ 0.75
Brf1Q8CFK2 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Brf1Q8CFK2 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Brf1Q8CFK2 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Brf1Q8CFK2 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Brf1Q8CFK2 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Brf1Q8CFK2 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Brf1Q8CFK2 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Brf1Q8CFK2 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Brf1Q8CFK2 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Brf1Q8CFK2 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC19.73■□□□□ 0.75
Brf1Q8CFK2 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC19.73■□□□□ 0.75
Brf1Q8CFK2 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC19.73■□□□□ 0.75
Brf1Q8CFK2 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Brf1Q8CFK2 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Brf1Q8CFK2 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Brf1Q8CFK2 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC19.73■□□□□ 0.75
Brf1Q8CFK2 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Brf1Q8CFK2 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC19.72■□□□□ 0.75
Brf1Q8CFK2 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Brf1Q8CFK2 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Brf1Q8CFK2 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Brf1Q8CFK2 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC19.72■□□□□ 0.75
Brf1Q8CFK2 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Brf1Q8CFK2 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
Brf1Q8CFK2 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Brf1Q8CFK2 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC19.72■□□□□ 0.75
Brf1Q8CFK2 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Brf1Q8CFK2 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Brf1Q8CFK2 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Brf1Q8CFK2 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Brf1Q8CFK2 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Brf1Q8CFK2 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Brf1Q8CFK2 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
Brf1Q8CFK2 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Brf1Q8CFK2 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Brf1Q8CFK2 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC19.71■□□□□ 0.75
Brf1Q8CFK2 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Brf1Q8CFK2 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Brf1Q8CFK2 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Brf1Q8CFK2 Gm14464-201ENSMUST00000119658 1254 ntBASIC19.71■□□□□ 0.75
Brf1Q8CFK2 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Brf1Q8CFK2 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Brf1Q8CFK2 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
Brf1Q8CFK2 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC19.71■□□□□ 0.75
Brf1Q8CFK2 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Brf1Q8CFK2 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Brf1Q8CFK2 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Brf1Q8CFK2 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Brf1Q8CFK2 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Brf1Q8CFK2 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Brf1Q8CFK2 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Brf1Q8CFK2 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Brf1Q8CFK2 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Brf1Q8CFK2 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Brf1Q8CFK2 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Brf1Q8CFK2 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Brf1Q8CFK2 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Brf1Q8CFK2 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Brf1Q8CFK2 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Brf1Q8CFK2 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Brf1Q8CFK2 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC19.7■□□□□ 0.74
Brf1Q8CFK2 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Brf1Q8CFK2 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Brf1Q8CFK2 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Brf1Q8CFK2 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Brf1Q8CFK2 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Brf1Q8CFK2 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Brf1Q8CFK2 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Brf1Q8CFK2 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Brf1Q8CFK2 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Brf1Q8CFK2 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Brf1Q8CFK2 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Brf1Q8CFK2 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Brf1Q8CFK2 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Brf1Q8CFK2 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Brf1Q8CFK2 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Brf1Q8CFK2 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Brf1Q8CFK2 AC115863.1-201ENSMUST00000214815 1813 ntBASIC19.69■□□□□ 0.74
Brf1Q8CFK2 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Brf1Q8CFK2 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Brf1Q8CFK2 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Brf1Q8CFK2 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Brf1Q8CFK2 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Brf1Q8CFK2 Gm10052-201ENSMUST00000168019 960 ntBASIC19.69■□□□□ 0.74
Brf1Q8CFK2 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 38.4 ms