Protein–RNA interactions for Protein: Q8BHH8

Clrn3, Clarin-3, mousemouse

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn3Q8BHH8 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Clrn3Q8BHH8 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
Clrn3Q8BHH8 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC15.33■□□□□ 0.05
Clrn3Q8BHH8 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Clrn3Q8BHH8 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Clrn3Q8BHH8 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
Clrn3Q8BHH8 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Clrn3Q8BHH8 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
Clrn3Q8BHH8 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC15.33■□□□□ 0.05
Clrn3Q8BHH8 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Clrn3Q8BHH8 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC15.33■□□□□ 0.04
Clrn3Q8BHH8 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Clrn3Q8BHH8 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Clrn3Q8BHH8 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Clrn3Q8BHH8 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC15.33■□□□□ 0.04
Clrn3Q8BHH8 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC15.33■□□□□ 0.04
Clrn3Q8BHH8 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC15.33■□□□□ 0.04
Clrn3Q8BHH8 AC122351.1-201ENSMUST00000220467 126 ntBASIC15.33■□□□□ 0.04
Clrn3Q8BHH8 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Clrn3Q8BHH8 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Clrn3Q8BHH8 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC15.33■□□□□ 0.04
Clrn3Q8BHH8 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Clrn3Q8BHH8 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC15.33■□□□□ 0.04
Clrn3Q8BHH8 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Clrn3Q8BHH8 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Clrn3Q8BHH8 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Clrn3Q8BHH8 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Clrn3Q8BHH8 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Clrn3Q8BHH8 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Clrn3Q8BHH8 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Clrn3Q8BHH8 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Clrn3Q8BHH8 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Clrn3Q8BHH8 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
Clrn3Q8BHH8 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Clrn3Q8BHH8 AC153526.5-201ENSMUST00000218661 2147 ntBASIC15.32■□□□□ 0.04
Clrn3Q8BHH8 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Clrn3Q8BHH8 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Clrn3Q8BHH8 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Clrn3Q8BHH8 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Clrn3Q8BHH8 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Clrn3Q8BHH8 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
Clrn3Q8BHH8 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Clrn3Q8BHH8 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Clrn3Q8BHH8 Gm26039-201ENSMUST00000158152 144 ntBASIC15.32■□□□□ 0.04
Clrn3Q8BHH8 Gm22697-201ENSMUST00000175194 63 ntBASIC15.32■□□□□ 0.04
Clrn3Q8BHH8 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Clrn3Q8BHH8 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Clrn3Q8BHH8 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Clrn3Q8BHH8 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Clrn3Q8BHH8 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Clrn3Q8BHH8 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Clrn3Q8BHH8 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Clrn3Q8BHH8 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Clrn3Q8BHH8 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Clrn3Q8BHH8 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Clrn3Q8BHH8 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Clrn3Q8BHH8 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Clrn3Q8BHH8 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Clrn3Q8BHH8 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Clrn3Q8BHH8 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Clrn3Q8BHH8 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Clrn3Q8BHH8 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Clrn3Q8BHH8 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Clrn3Q8BHH8 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Clrn3Q8BHH8 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Clrn3Q8BHH8 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Clrn3Q8BHH8 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC15.31■□□□□ 0.04
Clrn3Q8BHH8 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Clrn3Q8BHH8 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Clrn3Q8BHH8 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Clrn3Q8BHH8 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Clrn3Q8BHH8 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Clrn3Q8BHH8 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Clrn3Q8BHH8 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Clrn3Q8BHH8 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Clrn3Q8BHH8 Wnt10b-204ENSMUST00000226655 1807 ntBASIC15.31■□□□□ 0.04
Clrn3Q8BHH8 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Clrn3Q8BHH8 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Clrn3Q8BHH8 Gm16011-201ENSMUST00000121567 2662 ntBASIC15.3■□□□□ 0.04
Clrn3Q8BHH8 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Clrn3Q8BHH8 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Clrn3Q8BHH8 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Clrn3Q8BHH8 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Clrn3Q8BHH8 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Clrn3Q8BHH8 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Clrn3Q8BHH8 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Clrn3Q8BHH8 Gm10013-201ENSMUST00000106074 672 ntBASIC15.3■□□□□ 0.04
Clrn3Q8BHH8 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Clrn3Q8BHH8 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Clrn3Q8BHH8 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Clrn3Q8BHH8 Gm8839-201ENSMUST00000121279 1645 ntBASIC15.3■□□□□ 0.04
Clrn3Q8BHH8 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
Clrn3Q8BHH8 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Clrn3Q8BHH8 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Clrn3Q8BHH8 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Clrn3Q8BHH8 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Clrn3Q8BHH8 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Clrn3Q8BHH8 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC15.3■□□□□ 0.04
Clrn3Q8BHH8 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC15.3■□□□□ 0.04
Clrn3Q8BHH8 Gm18032-201ENSMUST00000222541 538 ntBASIC15.3■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 59.1 ms