Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim56Q80VI1 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim56Q80VI1 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
Trim56Q80VI1 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Trim56Q80VI1 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim56Q80VI1 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim56Q80VI1 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC19.25■□□□□ 0.67
Trim56Q80VI1 Gm17971-201ENSMUST00000190239 806 ntBASIC19.25■□□□□ 0.67
Trim56Q80VI1 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC19.25■□□□□ 0.67
Trim56Q80VI1 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim56Q80VI1 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Trim56Q80VI1 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC19.25■□□□□ 0.67
Trim56Q80VI1 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim56Q80VI1 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim56Q80VI1 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC19.25■□□□□ 0.67
Trim56Q80VI1 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim56Q80VI1 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim56Q80VI1 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
Trim56Q80VI1 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim56Q80VI1 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim56Q80VI1 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim56Q80VI1 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim56Q80VI1 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim56Q80VI1 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim56Q80VI1 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim56Q80VI1 Gm12895-201ENSMUST00000122214 226 ntBASIC19.24■□□□□ 0.67
Trim56Q80VI1 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trim56Q80VI1 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Trim56Q80VI1 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim56Q80VI1 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim56Q80VI1 AC153889.1-201ENSMUST00000219257 330 ntBASIC19.24■□□□□ 0.67
Trim56Q80VI1 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim56Q80VI1 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim56Q80VI1 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trim56Q80VI1 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim56Q80VI1 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim56Q80VI1 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Trim56Q80VI1 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Trim56Q80VI1 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim56Q80VI1 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim56Q80VI1 Gm6858-201ENSMUST00000208582 1468 ntBASIC19.23■□□□□ 0.67
Trim56Q80VI1 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim56Q80VI1 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim56Q80VI1 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim56Q80VI1 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim56Q80VI1 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC19.23■□□□□ 0.67
Trim56Q80VI1 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC19.23■□□□□ 0.67
Trim56Q80VI1 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC19.23■□□□□ 0.67
Trim56Q80VI1 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC19.23■□□□□ 0.67
Trim56Q80VI1 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC19.23■□□□□ 0.67
Trim56Q80VI1 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC19.23■□□□□ 0.67
Trim56Q80VI1 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim56Q80VI1 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim56Q80VI1 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim56Q80VI1 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim56Q80VI1 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim56Q80VI1 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
Trim56Q80VI1 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim56Q80VI1 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim56Q80VI1 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Trim56Q80VI1 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim56Q80VI1 AC132265.1-201ENSMUST00000219233 1665 ntBASIC19.22■□□□□ 0.67
Trim56Q80VI1 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC19.22■□□□□ 0.67
Trim56Q80VI1 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC19.22■□□□□ 0.67
Trim56Q80VI1 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC19.22■□□□□ 0.67
Trim56Q80VI1 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Trim56Q80VI1 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim56Q80VI1 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim56Q80VI1 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Trim56Q80VI1 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Trim56Q80VI1 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim56Q80VI1 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim56Q80VI1 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Trim56Q80VI1 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim56Q80VI1 Hivep3-201ENSMUST00000084306 2973 ntBASIC19.21■□□□□ 0.67
Trim56Q80VI1 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim56Q80VI1 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC19.21■□□□□ 0.67
Trim56Q80VI1 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim56Q80VI1 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim56Q80VI1 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim56Q80VI1 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Trim56Q80VI1 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trim56Q80VI1 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim56Q80VI1 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Trim56Q80VI1 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trim56Q80VI1 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trim56Q80VI1 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim56Q80VI1 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trim56Q80VI1 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trim56Q80VI1 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim56Q80VI1 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Trim56Q80VI1 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim56Q80VI1 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim56Q80VI1 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim56Q80VI1 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trim56Q80VI1 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC19.2■□□□□ 0.66
Trim56Q80VI1 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim56Q80VI1 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trim56Q80VI1 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Trim56Q80VI1 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 26.6 ms