Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Ddx58Q6Q899 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx58Q6Q899 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx58Q6Q899 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Ddx58Q6Q899 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx58Q6Q899 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx58Q6Q899 Gm7862-201ENSMUST00000121461 292 ntBASIC20.15■□□□□ 0.82
Ddx58Q6Q899 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC20.15■□□□□ 0.82
Ddx58Q6Q899 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC20.15■□□□□ 0.82
Ddx58Q6Q899 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx58Q6Q899 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx58Q6Q899 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx58Q6Q899 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx58Q6Q899 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx58Q6Q899 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx58Q6Q899 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC20.15■□□□□ 0.82
Ddx58Q6Q899 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx58Q6Q899 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC20.15■□□□□ 0.82
Ddx58Q6Q899 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx58Q6Q899 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddx58Q6Q899 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Ddx58Q6Q899 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Ddx58Q6Q899 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Ddx58Q6Q899 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx58Q6Q899 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx58Q6Q899 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx58Q6Q899 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx58Q6Q899 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx58Q6Q899 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx58Q6Q899 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx58Q6Q899 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC20.14■□□□□ 0.81
Ddx58Q6Q899 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx58Q6Q899 Vti1a-206ENSMUST00000225529 1244 ntBASIC20.14■□□□□ 0.81
Ddx58Q6Q899 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx58Q6Q899 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx58Q6Q899 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx58Q6Q899 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx58Q6Q899 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx58Q6Q899 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx58Q6Q899 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx58Q6Q899 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddx58Q6Q899 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ddx58Q6Q899 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ddx58Q6Q899 Gm15635-204ENSMUST00000208024 2539 ntBASIC20.13■□□□□ 0.81
Ddx58Q6Q899 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ddx58Q6Q899 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ddx58Q6Q899 Shroom3-211ENSMUST00000225438 5742 ntBASIC20.13■□□□□ 0.81
Ddx58Q6Q899 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC20.13■□□□□ 0.81
Ddx58Q6Q899 Gm25406-201ENSMUST00000157599 105 ntBASIC20.13■□□□□ 0.81
Ddx58Q6Q899 Mir6404-201ENSMUST00000183699 94 ntBASIC20.13■□□□□ 0.81
Ddx58Q6Q899 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC20.13■□□□□ 0.81
Ddx58Q6Q899 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ddx58Q6Q899 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Ddx58Q6Q899 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ddx58Q6Q899 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Ddx58Q6Q899 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ddx58Q6Q899 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ddx58Q6Q899 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddx58Q6Q899 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC20.12■□□□□ 0.81
Ddx58Q6Q899 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC20.12■□□□□ 0.81
Ddx58Q6Q899 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC20.12■□□□□ 0.81
Ddx58Q6Q899 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddx58Q6Q899 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC20.12■□□□□ 0.81
Ddx58Q6Q899 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
Ddx58Q6Q899 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddx58Q6Q899 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddx58Q6Q899 Gm12497-201ENSMUST00000138778 237 ntBASIC20.12■□□□□ 0.81
Ddx58Q6Q899 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Ddx58Q6Q899 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Ddx58Q6Q899 Gm9449-201ENSMUST00000207265 1011 ntBASIC20.12■□□□□ 0.81
Ddx58Q6Q899 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddx58Q6Q899 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddx58Q6Q899 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddx58Q6Q899 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ddx58Q6Q899 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx58Q6Q899 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx58Q6Q899 Gm18856-201ENSMUST00000178096 1374 ntBASIC20.11■□□□□ 0.81
Ddx58Q6Q899 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx58Q6Q899 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx58Q6Q899 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx58Q6Q899 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx58Q6Q899 Gm18733-201ENSMUST00000173950 856 ntBASIC20.11■□□□□ 0.81
Ddx58Q6Q899 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC20.11■□□□□ 0.81
Ddx58Q6Q899 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Ddx58Q6Q899 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC20.11■□□□□ 0.81
Ddx58Q6Q899 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Ddx58Q6Q899 Gm9172-201ENSMUST00000212092 954 ntBASIC20.11■□□□□ 0.81
Ddx58Q6Q899 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx58Q6Q899 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
Ddx58Q6Q899 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx58Q6Q899 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx58Q6Q899 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx58Q6Q899 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx58Q6Q899 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Ddx58Q6Q899 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ddx58Q6Q899 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx58Q6Q899 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx58Q6Q899 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx58Q6Q899 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx58Q6Q899 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms