Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trim28Q62318 AC115863.1-201ENSMUST00000214815 1813 ntBASIC21.14■□□□□ 0.97
Trim28Q62318 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC21.14■□□□□ 0.97
Trim28Q62318 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trim28Q62318 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Trim28Q62318 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Trim28Q62318 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC21.14■□□□□ 0.97
Trim28Q62318 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC21.14■□□□□ 0.97
Trim28Q62318 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trim28Q62318 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trim28Q62318 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim28Q62318 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim28Q62318 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim28Q62318 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Trim28Q62318 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC21.13■□□□□ 0.97
Trim28Q62318 Gm1401-201ENSMUST00000122048 772 ntBASIC21.13■□□□□ 0.97
Trim28Q62318 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC21.13■□□□□ 0.97
Trim28Q62318 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Trim28Q62318 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim28Q62318 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim28Q62318 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim28Q62318 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Trim28Q62318 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim28Q62318 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim28Q62318 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim28Q62318 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
Trim28Q62318 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim28Q62318 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Trim28Q62318 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim28Q62318 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Trim28Q62318 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Trim28Q62318 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim28Q62318 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Trim28Q62318 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim28Q62318 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim28Q62318 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Trim28Q62318 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim28Q62318 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim28Q62318 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim28Q62318 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim28Q62318 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim28Q62318 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC21.11■□□□□ 0.97
Trim28Q62318 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Trim28Q62318 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
Trim28Q62318 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Trim28Q62318 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC21.11■□□□□ 0.97
Trim28Q62318 AC154757.1-201ENSMUST00000228289 336 ntBASIC21.11■□□□□ 0.97
Trim28Q62318 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim28Q62318 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Trim28Q62318 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim28Q62318 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim28Q62318 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim28Q62318 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim28Q62318 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim28Q62318 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim28Q62318 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim28Q62318 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Trim28Q62318 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Trim28Q62318 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim28Q62318 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Trim28Q62318 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC21.1■□□□□ 0.97
Trim28Q62318 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Trim28Q62318 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim28Q62318 Gm4609-201ENSMUST00000106443 1002 ntBASIC21.1■□□□□ 0.97
Trim28Q62318 Gm5138-201ENSMUST00000113842 1002 ntBASIC21.1■□□□□ 0.97
Trim28Q62318 Gm15191-201ENSMUST00000117933 1000 ntBASIC21.1■□□□□ 0.97
Trim28Q62318 Gm12182-201ENSMUST00000118655 1008 ntBASIC21.1■□□□□ 0.97
Trim28Q62318 Gm13882-201ENSMUST00000120886 1002 ntBASIC21.1■□□□□ 0.97
Trim28Q62318 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim28Q62318 Gm10284-201ENSMUST00000145057 1005 ntBASIC21.1■□□□□ 0.97
Trim28Q62318 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
Trim28Q62318 Gm10481-201ENSMUST00000179228 1002 ntBASIC21.1■□□□□ 0.97
Trim28Q62318 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC21.1■□□□□ 0.97
Trim28Q62318 Gm2574-201ENSMUST00000181051 1002 ntBASIC21.1■□□□□ 0.97
Trim28Q62318 Gm3200-201ENSMUST00000181493 1002 ntBASIC21.1■□□□□ 0.97
Trim28Q62318 Gm8825-201ENSMUST00000182565 998 ntBASIC21.1■□□□□ 0.97
Trim28Q62318 Gm4518-201ENSMUST00000182638 718 ntBASIC21.1■□□□□ 0.97
Trim28Q62318 Gm8330-201ENSMUST00000182754 1008 ntBASIC21.1■□□□□ 0.97
Trim28Q62318 Gm4575-201ENSMUST00000182991 1002 ntBASIC21.1■□□□□ 0.97
Trim28Q62318 Gm8709-201ENSMUST00000183230 1012 ntBASIC21.1■□□□□ 0.97
Trim28Q62318 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC21.1■□□□□ 0.97
Trim28Q62318 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim28Q62318 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC21.1■□□□□ 0.97
Trim28Q62318 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim28Q62318 Gm10293-201ENSMUST00000076317 1002 ntBASIC21.1■□□□□ 0.97
Trim28Q62318 Gm6316-201ENSMUST00000082064 1020 ntBASIC21.1■□□□□ 0.97
Trim28Q62318 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim28Q62318 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Trim28Q62318 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Trim28Q62318 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim28Q62318 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Trim28Q62318 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC21.1■□□□□ 0.97
Trim28Q62318 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim28Q62318 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Trim28Q62318 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC21.09■□□□□ 0.97
Trim28Q62318 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Trim28Q62318 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC21.09■□□□□ 0.97
Trim28Q62318 AC154527.4-201ENSMUST00000224364 1667 ntBASIC21.09■□□□□ 0.97
Trim28Q62318 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC21.09■□□□□ 0.97
Trim28Q62318 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms