Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc88aQ5SNZ0 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc88aQ5SNZ0 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc88aQ5SNZ0 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc88aQ5SNZ0 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc88aQ5SNZ0 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC18.7■□□□□ 0.58
Ccdc88aQ5SNZ0 AC225888.1-201ENSMUST00000227184 728 ntBASIC18.7■□□□□ 0.58
Ccdc88aQ5SNZ0 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc88aQ5SNZ0 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc88aQ5SNZ0 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc88aQ5SNZ0 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc88aQ5SNZ0 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Ccdc88aQ5SNZ0 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc88aQ5SNZ0 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc88aQ5SNZ0 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc88aQ5SNZ0 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC18.69■□□□□ 0.58
Ccdc88aQ5SNZ0 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc88aQ5SNZ0 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc88aQ5SNZ0 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc88aQ5SNZ0 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc88aQ5SNZ0 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC18.69■□□□□ 0.58
Ccdc88aQ5SNZ0 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc88aQ5SNZ0 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC18.69■□□□□ 0.58
Ccdc88aQ5SNZ0 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC18.69■□□□□ 0.58
Ccdc88aQ5SNZ0 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc88aQ5SNZ0 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc88aQ5SNZ0 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc88aQ5SNZ0 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Ccdc88aQ5SNZ0 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Ccdc88aQ5SNZ0 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc88aQ5SNZ0 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc88aQ5SNZ0 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc88aQ5SNZ0 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC18.69■□□□□ 0.58
Ccdc88aQ5SNZ0 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
Ccdc88aQ5SNZ0 Gm25745-201ENSMUST00000174945 133 ntBASIC18.69■□□□□ 0.58
Ccdc88aQ5SNZ0 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC18.69■□□□□ 0.58
Ccdc88aQ5SNZ0 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
Ccdc88aQ5SNZ0 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc88aQ5SNZ0 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Ccdc88aQ5SNZ0 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc88aQ5SNZ0 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc88aQ5SNZ0 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc88aQ5SNZ0 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc88aQ5SNZ0 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
Ccdc88aQ5SNZ0 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC18.68■□□□□ 0.58
Ccdc88aQ5SNZ0 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc88aQ5SNZ0 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC18.68■□□□□ 0.58
Ccdc88aQ5SNZ0 AC154222.1-201ENSMUST00000223882 475 ntBASIC18.68■□□□□ 0.58
Ccdc88aQ5SNZ0 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc88aQ5SNZ0 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc88aQ5SNZ0 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
Ccdc88aQ5SNZ0 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc88aQ5SNZ0 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc88aQ5SNZ0 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc88aQ5SNZ0 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC18.67■□□□□ 0.58
Ccdc88aQ5SNZ0 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC18.67■□□□□ 0.58
Ccdc88aQ5SNZ0 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc88aQ5SNZ0 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC18.67■□□□□ 0.58
Ccdc88aQ5SNZ0 Gm15590-201ENSMUST00000078419 552 ntBASIC18.67■□□□□ 0.58
Ccdc88aQ5SNZ0 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Ccdc88aQ5SNZ0 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc88aQ5SNZ0 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc88aQ5SNZ0 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc88aQ5SNZ0 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc88aQ5SNZ0 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc88aQ5SNZ0 Gm6858-201ENSMUST00000208582 1468 ntBASIC18.67■□□□□ 0.58
Ccdc88aQ5SNZ0 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc88aQ5SNZ0 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
Ccdc88aQ5SNZ0 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc88aQ5SNZ0 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc88aQ5SNZ0 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC18.67■□□□□ 0.58
Ccdc88aQ5SNZ0 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC18.67■□□□□ 0.58
Ccdc88aQ5SNZ0 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC18.67■□□□□ 0.58
Ccdc88aQ5SNZ0 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC18.67■□□□□ 0.58
Ccdc88aQ5SNZ0 Gm8349-201ENSMUST00000182720 1003 ntBASIC18.67■□□□□ 0.58
Ccdc88aQ5SNZ0 Gm27628-201ENSMUST00000184911 107 ntBASIC18.67■□□□□ 0.58
Ccdc88aQ5SNZ0 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
Ccdc88aQ5SNZ0 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc88aQ5SNZ0 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Ccdc88aQ5SNZ0 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ccdc88aQ5SNZ0 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ccdc88aQ5SNZ0 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ccdc88aQ5SNZ0 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Ccdc88aQ5SNZ0 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ccdc88aQ5SNZ0 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ccdc88aQ5SNZ0 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Ccdc88aQ5SNZ0 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ccdc88aQ5SNZ0 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Ccdc88aQ5SNZ0 Gm12497-201ENSMUST00000138778 237 ntBASIC18.66■□□□□ 0.58
Ccdc88aQ5SNZ0 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC18.66■□□□□ 0.58
Ccdc88aQ5SNZ0 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ccdc88aQ5SNZ0 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Ccdc88aQ5SNZ0 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Ccdc88aQ5SNZ0 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ccdc88aQ5SNZ0 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Ccdc88aQ5SNZ0 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ccdc88aQ5SNZ0 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Ccdc88aQ5SNZ0 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ccdc88aQ5SNZ0 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC18.65■□□□□ 0.58
Ccdc88aQ5SNZ0 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms