Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Upf3bQ3ULL6 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Upf3bQ3ULL6 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Upf3bQ3ULL6 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Upf3bQ3ULL6 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Upf3bQ3ULL6 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC17.48■□□□□ 0.39
Upf3bQ3ULL6 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC17.48■□□□□ 0.39
Upf3bQ3ULL6 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Upf3bQ3ULL6 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Upf3bQ3ULL6 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Upf3bQ3ULL6 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
Upf3bQ3ULL6 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Upf3bQ3ULL6 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Upf3bQ3ULL6 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Upf3bQ3ULL6 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Upf3bQ3ULL6 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Upf3bQ3ULL6 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Upf3bQ3ULL6 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Upf3bQ3ULL6 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 Gm45328-201ENSMUST00000210942 917 ntBASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 AC159205.3-201ENSMUST00000224614 874 ntBASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Upf3bQ3ULL6 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Upf3bQ3ULL6 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Upf3bQ3ULL6 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Upf3bQ3ULL6 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Upf3bQ3ULL6 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Upf3bQ3ULL6 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Upf3bQ3ULL6 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Upf3bQ3ULL6 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Upf3bQ3ULL6 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Upf3bQ3ULL6 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC17.46■□□□□ 0.39
Upf3bQ3ULL6 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Upf3bQ3ULL6 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Upf3bQ3ULL6 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Upf3bQ3ULL6 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Upf3bQ3ULL6 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Upf3bQ3ULL6 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Upf3bQ3ULL6 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Upf3bQ3ULL6 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Upf3bQ3ULL6 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
Upf3bQ3ULL6 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Upf3bQ3ULL6 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Upf3bQ3ULL6 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Upf3bQ3ULL6 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC17.45■□□□□ 0.38
Upf3bQ3ULL6 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC17.45■□□□□ 0.38
Upf3bQ3ULL6 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Upf3bQ3ULL6 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Upf3bQ3ULL6 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Upf3bQ3ULL6 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC17.45■□□□□ 0.38
Upf3bQ3ULL6 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC17.45■□□□□ 0.38
Upf3bQ3ULL6 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
Upf3bQ3ULL6 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Upf3bQ3ULL6 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Upf3bQ3ULL6 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC17.45■□□□□ 0.38
Upf3bQ3ULL6 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Upf3bQ3ULL6 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Upf3bQ3ULL6 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Upf3bQ3ULL6 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Upf3bQ3ULL6 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Upf3bQ3ULL6 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Upf3bQ3ULL6 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Upf3bQ3ULL6 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Upf3bQ3ULL6 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Upf3bQ3ULL6 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Upf3bQ3ULL6 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Upf3bQ3ULL6 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Upf3bQ3ULL6 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Upf3bQ3ULL6 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Upf3bQ3ULL6 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms