Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Limch1Q3UH68 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC19.21■□□□□ 0.67
Limch1Q3UH68 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC19.21■□□□□ 0.67
Limch1Q3UH68 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Limch1Q3UH68 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC19.21■□□□□ 0.67
Limch1Q3UH68 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Limch1Q3UH68 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Limch1Q3UH68 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Limch1Q3UH68 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Limch1Q3UH68 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC19.21■□□□□ 0.67
Limch1Q3UH68 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Limch1Q3UH68 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC19.21■□□□□ 0.67
Limch1Q3UH68 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC19.21■□□□□ 0.67
Limch1Q3UH68 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Limch1Q3UH68 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Limch1Q3UH68 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Limch1Q3UH68 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Limch1Q3UH68 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Limch1Q3UH68 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Limch1Q3UH68 Gm11950-201ENSMUST00000121615 838 ntBASIC19.2■□□□□ 0.66
Limch1Q3UH68 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Limch1Q3UH68 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Limch1Q3UH68 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Limch1Q3UH68 Gm3272-201ENSMUST00000181181 1229 ntBASIC19.2■□□□□ 0.66
Limch1Q3UH68 Gm44450-201ENSMUST00000199528 114 ntBASIC19.2■□□□□ 0.66
Limch1Q3UH68 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Limch1Q3UH68 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Limch1Q3UH68 Gm10566-201ENSMUST00000086739 996 ntBASIC19.2■□□□□ 0.66
Limch1Q3UH68 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
Limch1Q3UH68 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Limch1Q3UH68 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Limch1Q3UH68 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Limch1Q3UH68 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Limch1Q3UH68 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
Limch1Q3UH68 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Limch1Q3UH68 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC19.2■□□□□ 0.66
Limch1Q3UH68 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Limch1Q3UH68 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Limch1Q3UH68 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Limch1Q3UH68 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Limch1Q3UH68 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Limch1Q3UH68 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Limch1Q3UH68 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Limch1Q3UH68 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Limch1Q3UH68 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Limch1Q3UH68 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Limch1Q3UH68 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Limch1Q3UH68 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Limch1Q3UH68 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Limch1Q3UH68 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Limch1Q3UH68 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Limch1Q3UH68 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Limch1Q3UH68 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
Limch1Q3UH68 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Limch1Q3UH68 Zfp264-201ENSMUST00000208656 1563 ntBASIC19.19■□□□□ 0.66
Limch1Q3UH68 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Limch1Q3UH68 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Limch1Q3UH68 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Limch1Q3UH68 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Limch1Q3UH68 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Limch1Q3UH68 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Limch1Q3UH68 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Limch1Q3UH68 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Limch1Q3UH68 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Limch1Q3UH68 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC19.18■□□□□ 0.66
Limch1Q3UH68 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Limch1Q3UH68 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC19.18■□□□□ 0.66
Limch1Q3UH68 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC19.18■□□□□ 0.66
Limch1Q3UH68 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC19.18■□□□□ 0.66
Limch1Q3UH68 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Limch1Q3UH68 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Limch1Q3UH68 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Limch1Q3UH68 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Limch1Q3UH68 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Limch1Q3UH68 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Limch1Q3UH68 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Limch1Q3UH68 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Limch1Q3UH68 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Limch1Q3UH68 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Limch1Q3UH68 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Limch1Q3UH68 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Limch1Q3UH68 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Limch1Q3UH68 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC19.17■□□□□ 0.66
Limch1Q3UH68 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Limch1Q3UH68 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Limch1Q3UH68 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Limch1Q3UH68 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Limch1Q3UH68 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Limch1Q3UH68 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Limch1Q3UH68 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Limch1Q3UH68 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Limch1Q3UH68 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Limch1Q3UH68 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Limch1Q3UH68 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Limch1Q3UH68 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
Limch1Q3UH68 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Limch1Q3UH68 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Limch1Q3UH68 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Limch1Q3UH68 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Limch1Q3UH68 AC115863.1-201ENSMUST00000214815 1813 ntBASIC19.16■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms