Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Ddb1Q3U1J4 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Ddb1Q3U1J4 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ddb1Q3U1J4 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ddb1Q3U1J4 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC20.68■□□□□ 0.9
Ddb1Q3U1J4 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ddb1Q3U1J4 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ddb1Q3U1J4 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC20.68■□□□□ 0.9
Ddb1Q3U1J4 AC132265.1-201ENSMUST00000219233 1665 ntBASIC20.68■□□□□ 0.9
Ddb1Q3U1J4 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Ddb1Q3U1J4 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ddb1Q3U1J4 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC20.68■□□□□ 0.9
Ddb1Q3U1J4 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ddb1Q3U1J4 Mir1895-201ENSMUST00000122615 79 ntBASIC20.68■□□□□ 0.9
Ddb1Q3U1J4 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC20.68■□□□□ 0.9
Ddb1Q3U1J4 Gm27494-201ENSMUST00000184735 189 ntBASIC20.68■□□□□ 0.9
Ddb1Q3U1J4 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ddb1Q3U1J4 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC20.68■□□□□ 0.9
Ddb1Q3U1J4 Iqck-206ENSMUST00000208658 2891 ntBASIC20.68■□□□□ 0.9
Ddb1Q3U1J4 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ddb1Q3U1J4 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ddb1Q3U1J4 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ddb1Q3U1J4 Gm43808-201ENSMUST00000202534 2065 ntBASIC20.68■□□□□ 0.9
Ddb1Q3U1J4 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ddb1Q3U1J4 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ddb1Q3U1J4 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Ddb1Q3U1J4 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ddb1Q3U1J4 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC20.67■□□□□ 0.9
Ddb1Q3U1J4 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ddb1Q3U1J4 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Ddb1Q3U1J4 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC20.67■□□□□ 0.9
Ddb1Q3U1J4 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ddb1Q3U1J4 AC117588.1-201ENSMUST00000228510 999 ntBASIC20.67■□□□□ 0.9
Ddb1Q3U1J4 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ddb1Q3U1J4 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Ddb1Q3U1J4 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Ddb1Q3U1J4 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ddb1Q3U1J4 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Ddb1Q3U1J4 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ddb1Q3U1J4 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ddb1Q3U1J4 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Ddb1Q3U1J4 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ddb1Q3U1J4 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ddb1Q3U1J4 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ddb1Q3U1J4 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ddb1Q3U1J4 Wdyhv1-206ENSMUST00000227142 786 ntBASIC20.66■□□□□ 0.9
Ddb1Q3U1J4 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Ddb1Q3U1J4 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Ddb1Q3U1J4 Gm8784-201ENSMUST00000222096 1435 ntBASIC20.66■□□□□ 0.9
Ddb1Q3U1J4 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Ddb1Q3U1J4 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ddb1Q3U1J4 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ddb1Q3U1J4 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC20.66■□□□□ 0.9
Ddb1Q3U1J4 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ddb1Q3U1J4 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ddb1Q3U1J4 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ddb1Q3U1J4 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ddb1Q3U1J4 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ddb1Q3U1J4 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Ddb1Q3U1J4 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC20.65■□□□□ 0.9
Ddb1Q3U1J4 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC20.65■□□□□ 0.9
Ddb1Q3U1J4 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC20.65■□□□□ 0.9
Ddb1Q3U1J4 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Ddb1Q3U1J4 Gm17968-201ENSMUST00000194902 784 ntBASIC20.65■□□□□ 0.9
Ddb1Q3U1J4 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Ddb1Q3U1J4 Gm8969-201ENSMUST00000199694 526 ntBASIC20.65■□□□□ 0.9
Ddb1Q3U1J4 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC20.65■□□□□ 0.9
Ddb1Q3U1J4 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
Ddb1Q3U1J4 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ddb1Q3U1J4 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ddb1Q3U1J4 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ddb1Q3U1J4 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC20.65■□□□□ 0.9
Ddb1Q3U1J4 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ddb1Q3U1J4 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Ddb1Q3U1J4 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Ddb1Q3U1J4 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Ddb1Q3U1J4 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Ddb1Q3U1J4 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC20.64■□□□□ 0.9
Ddb1Q3U1J4 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Ddb1Q3U1J4 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Ddb1Q3U1J4 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Ddb1Q3U1J4 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC20.64■□□□□ 0.89
Ddb1Q3U1J4 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Ddb1Q3U1J4 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ddb1Q3U1J4 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ddb1Q3U1J4 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ddb1Q3U1J4 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Ddb1Q3U1J4 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC20.64■□□□□ 0.89
Ddb1Q3U1J4 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Ddb1Q3U1J4 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ddb1Q3U1J4 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Ddb1Q3U1J4 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ddb1Q3U1J4 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Ddb1Q3U1J4 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ddb1Q3U1J4 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC20.63■□□□□ 0.89
Ddb1Q3U1J4 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ddb1Q3U1J4 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC20.63■□□□□ 0.89
Ddb1Q3U1J4 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ddb1Q3U1J4 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Ddb1Q3U1J4 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC20.63■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms