Protein–RNA interactions for Protein: P79621

Ciita, MHC class II transactivator, mousemouse

Predictions only

Length 1,155 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CiitaP79621 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CiitaP79621 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CiitaP79621 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CiitaP79621 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC17.67■□□□□ 0.42
CiitaP79621 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC17.67■□□□□ 0.42
CiitaP79621 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CiitaP79621 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CiitaP79621 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CiitaP79621 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CiitaP79621 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CiitaP79621 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CiitaP79621 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CiitaP79621 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC17.66■□□□□ 0.42
CiitaP79621 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC17.66■□□□□ 0.42
CiitaP79621 AC127349.1-201ENSMUST00000224590 266 ntBASIC17.66■□□□□ 0.42
CiitaP79621 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CiitaP79621 AC132265.1-201ENSMUST00000219233 1665 ntBASIC17.66■□□□□ 0.42
CiitaP79621 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CiitaP79621 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CiitaP79621 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC17.66■□□□□ 0.42
CiitaP79621 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CiitaP79621 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CiitaP79621 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
CiitaP79621 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CiitaP79621 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
CiitaP79621 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CiitaP79621 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CiitaP79621 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
CiitaP79621 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CiitaP79621 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CiitaP79621 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC17.65■□□□□ 0.42
CiitaP79621 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CiitaP79621 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CiitaP79621 Gm6858-201ENSMUST00000208582 1468 ntBASIC17.65■□□□□ 0.42
CiitaP79621 Gm8349-201ENSMUST00000182720 1003 ntBASIC17.65■□□□□ 0.42
CiitaP79621 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC17.65■□□□□ 0.42
CiitaP79621 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC17.65■□□□□ 0.42
CiitaP79621 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CiitaP79621 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CiitaP79621 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CiitaP79621 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CiitaP79621 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CiitaP79621 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CiitaP79621 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CiitaP79621 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CiitaP79621 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CiitaP79621 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CiitaP79621 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CiitaP79621 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
CiitaP79621 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CiitaP79621 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
CiitaP79621 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CiitaP79621 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC17.64■□□□□ 0.41
CiitaP79621 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CiitaP79621 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
CiitaP79621 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CiitaP79621 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CiitaP79621 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC17.64■□□□□ 0.41
CiitaP79621 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC17.64■□□□□ 0.41
CiitaP79621 AC160338.1-201ENSMUST00000214232 705 ntBASIC17.64■□□□□ 0.41
CiitaP79621 AC159301.1-201ENSMUST00000225130 1182 ntBASIC17.64■□□□□ 0.41
CiitaP79621 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CiitaP79621 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CiitaP79621 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC17.63■□□□□ 0.41
CiitaP79621 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CiitaP79621 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CiitaP79621 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
CiitaP79621 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
CiitaP79621 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CiitaP79621 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC17.63■□□□□ 0.41
CiitaP79621 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CiitaP79621 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
CiitaP79621 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC17.63■□□□□ 0.41
CiitaP79621 AC164629.2-201ENSMUST00000217916 270 ntBASIC17.63■□□□□ 0.41
CiitaP79621 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
CiitaP79621 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CiitaP79621 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CiitaP79621 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
CiitaP79621 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
CiitaP79621 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CiitaP79621 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CiitaP79621 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CiitaP79621 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CiitaP79621 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CiitaP79621 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CiitaP79621 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CiitaP79621 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
CiitaP79621 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CiitaP79621 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CiitaP79621 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC17.62■□□□□ 0.41
CiitaP79621 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC17.62■□□□□ 0.41
CiitaP79621 Cmtm5-203ENSMUST00000227441 610 ntBASIC17.62■□□□□ 0.41
CiitaP79621 Gm7461-201ENSMUST00000058918 827 ntBASIC17.62■□□□□ 0.41
CiitaP79621 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CiitaP79621 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CiitaP79621 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CiitaP79621 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CiitaP79621 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
CiitaP79621 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CiitaP79621 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms