Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Hoxd3P09027 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Hoxd3P09027 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Hoxd3P09027 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Hoxd3P09027 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Hoxd3P09027 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC12.69□□□□□ -0.38
Hoxd3P09027 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC12.69□□□□□ -0.38
Hoxd3P09027 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC12.69□□□□□ -0.38
Hoxd3P09027 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Hoxd3P09027 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Hoxd3P09027 Gm14464-201ENSMUST00000119658 1254 ntBASIC12.69□□□□□ -0.38
Hoxd3P09027 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Hoxd3P09027 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Hoxd3P09027 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC12.69□□□□□ -0.38
Hoxd3P09027 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC12.69□□□□□ -0.38
Hoxd3P09027 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Hoxd3P09027 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Hoxd3P09027 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Hoxd3P09027 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Hoxd3P09027 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Hoxd3P09027 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Hoxd3P09027 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC12.69□□□□□ -0.38
Hoxd3P09027 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Hoxd3P09027 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC12.68□□□□□ -0.38
Hoxd3P09027 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Hoxd3P09027 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Hoxd3P09027 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Hoxd3P09027 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Hoxd3P09027 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Hoxd3P09027 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC12.68□□□□□ -0.38
Hoxd3P09027 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Hoxd3P09027 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Hoxd3P09027 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC12.68□□□□□ -0.38
Hoxd3P09027 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC12.68□□□□□ -0.38
Hoxd3P09027 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC12.68□□□□□ -0.38
Hoxd3P09027 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC12.68□□□□□ -0.38
Hoxd3P09027 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC12.68□□□□□ -0.38
Hoxd3P09027 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC12.68□□□□□ -0.38
Hoxd3P09027 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Hoxd3P09027 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Hoxd3P09027 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Hoxd3P09027 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Hoxd3P09027 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Hoxd3P09027 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Hoxd3P09027 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Hoxd3P09027 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Hoxd3P09027 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC12.68□□□□□ -0.38
Hoxd3P09027 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Hoxd3P09027 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC12.67□□□□□ -0.38
Hoxd3P09027 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hoxd3P09027 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hoxd3P09027 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hoxd3P09027 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Hoxd3P09027 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hoxd3P09027 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hoxd3P09027 Gm7153-201ENSMUST00000117092 455 ntBASIC12.67□□□□□ -0.38
Hoxd3P09027 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Hoxd3P09027 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Hoxd3P09027 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Hoxd3P09027 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Hoxd3P09027 Umpk-ps-201ENSMUST00000211897 827 ntBASIC12.67□□□□□ -0.38
Hoxd3P09027 AC124569.2-201ENSMUST00000225998 818 ntBASIC12.67□□□□□ -0.38
Hoxd3P09027 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Hoxd3P09027 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hoxd3P09027 Spr-ps1-201ENSMUST00000089584 605 ntBASIC12.67□□□□□ -0.38
Hoxd3P09027 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hoxd3P09027 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC12.67□□□□□ -0.38
Hoxd3P09027 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hoxd3P09027 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Hoxd3P09027 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hoxd3P09027 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hoxd3P09027 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC12.67□□□□□ -0.38
Hoxd3P09027 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hoxd3P09027 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Hoxd3P09027 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Hoxd3P09027 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hoxd3P09027 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Hoxd3P09027 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Hoxd3P09027 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC12.66□□□□□ -0.38
Hoxd3P09027 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hoxd3P09027 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Hoxd3P09027 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hoxd3P09027 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hoxd3P09027 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hoxd3P09027 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hoxd3P09027 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC12.66□□□□□ -0.38
Hoxd3P09027 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hoxd3P09027 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hoxd3P09027 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC12.66□□□□□ -0.38
Hoxd3P09027 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hoxd3P09027 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hoxd3P09027 Gm44430-201ENSMUST00000203376 995 ntBASIC12.66□□□□□ -0.38
Hoxd3P09027 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hoxd3P09027 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hoxd3P09027 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC12.66□□□□□ -0.38
Hoxd3P09027 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hoxd3P09027 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Hoxd3P09027 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Hoxd3P09027 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hoxd3P09027 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms