Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Vti1aO89116 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Vti1aO89116 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Vti1aO89116 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Vti1aO89116 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Vti1aO89116 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
Vti1aO89116 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Vti1aO89116 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Vti1aO89116 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Vti1aO89116 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Vti1aO89116 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Vti1aO89116 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
Vti1aO89116 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Vti1aO89116 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Vti1aO89116 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Vti1aO89116 Gm43548-201ENSMUST00000197139 2353 ntBASIC17.57■□□□□ 0.4
Vti1aO89116 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Vti1aO89116 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Vti1aO89116 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC17.57■□□□□ 0.4
Vti1aO89116 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
Vti1aO89116 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Vti1aO89116 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Vti1aO89116 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Vti1aO89116 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Vti1aO89116 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Vti1aO89116 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC17.57■□□□□ 0.4
Vti1aO89116 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Vti1aO89116 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Vti1aO89116 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Vti1aO89116 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Vti1aO89116 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Vti1aO89116 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Vti1aO89116 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Vti1aO89116 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC17.56■□□□□ 0.4
Vti1aO89116 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Vti1aO89116 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Vti1aO89116 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC17.56■□□□□ 0.4
Vti1aO89116 Gm29707-201ENSMUST00000196325 491 ntBASIC17.56■□□□□ 0.4
Vti1aO89116 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Vti1aO89116 Gm18421-201ENSMUST00000204122 625 ntBASIC17.56■□□□□ 0.4
Vti1aO89116 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Vti1aO89116 AC108846.1-201ENSMUST00000214531 513 ntBASIC17.56■□□□□ 0.4
Vti1aO89116 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Vti1aO89116 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC17.56■□□□□ 0.4
Vti1aO89116 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Vti1aO89116 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Vti1aO89116 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Vti1aO89116 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Vti1aO89116 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
Vti1aO89116 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Vti1aO89116 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Vti1aO89116 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Vti1aO89116 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
Vti1aO89116 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Vti1aO89116 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Vti1aO89116 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
Vti1aO89116 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Vti1aO89116 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Vti1aO89116 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Vti1aO89116 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC17.55■□□□□ 0.4
Vti1aO89116 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Vti1aO89116 AC159301.1-201ENSMUST00000225130 1182 ntBASIC17.55■□□□□ 0.4
Vti1aO89116 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Vti1aO89116 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
Vti1aO89116 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Vti1aO89116 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Vti1aO89116 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Vti1aO89116 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Vti1aO89116 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Vti1aO89116 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Vti1aO89116 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Vti1aO89116 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Vti1aO89116 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Vti1aO89116 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Vti1aO89116 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
Vti1aO89116 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Vti1aO89116 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Vti1aO89116 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Vti1aO89116 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Vti1aO89116 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Vti1aO89116 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Vti1aO89116 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Vti1aO89116 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Vti1aO89116 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Vti1aO89116 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Vti1aO89116 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Vti1aO89116 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Vti1aO89116 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC17.54■□□□□ 0.4
Vti1aO89116 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Vti1aO89116 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Vti1aO89116 Gm12644-201ENSMUST00000119935 606 ntBASIC17.54■□□□□ 0.4
Vti1aO89116 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC17.54■□□□□ 0.4
Vti1aO89116 Gm18733-201ENSMUST00000173950 856 ntBASIC17.54■□□□□ 0.4
Vti1aO89116 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Vti1aO89116 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Vti1aO89116 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Vti1aO89116 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Vti1aO89116 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Vti1aO89116 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Vti1aO89116 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms