Protein–RNA interactions for Protein: O54941

Smarce1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1, mousemouse

Known RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarce1O54941 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Smarce1O54941 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Smarce1O54941 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC19.43■□□□□ 0.7
Smarce1O54941 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Smarce1O54941 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Smarce1O54941 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Smarce1O54941 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
Smarce1O54941 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Smarce1O54941 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Smarce1O54941 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Smarce1O54941 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Smarce1O54941 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Smarce1O54941 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Smarce1O54941 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Smarce1O54941 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Smarce1O54941 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC19.42■□□□□ 0.7
Smarce1O54941 AC135963.1-201ENSMUST00000211640 717 ntBASIC19.42■□□□□ 0.7
Smarce1O54941 Arhgef33-211ENSMUST00000225658 473 ntBASIC19.42■□□□□ 0.7
Smarce1O54941 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Smarce1O54941 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Smarce1O54941 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Smarce1O54941 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC19.42■□□□□ 0.7
Smarce1O54941 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Smarce1O54941 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Smarce1O54941 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Smarce1O54941 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Smarce1O54941 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Smarce1O54941 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Smarce1O54941 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Smarce1O54941 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Smarce1O54941 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Smarce1O54941 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Smarce1O54941 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Smarce1O54941 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Smarce1O54941 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Smarce1O54941 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Smarce1O54941 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Smarce1O54941 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Smarce1O54941 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Smarce1O54941 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Smarce1O54941 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smarce1O54941 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smarce1O54941 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smarce1O54941 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smarce1O54941 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC19.4■□□□□ 0.7
Smarce1O54941 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Smarce1O54941 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC19.4■□□□□ 0.7
Smarce1O54941 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smarce1O54941 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Smarce1O54941 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smarce1O54941 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Smarce1O54941 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Smarce1O54941 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Smarce1O54941 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
Smarce1O54941 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smarce1O54941 Gm19430-201ENSMUST00000193847 2137 ntBASIC19.4■□□□□ 0.7
Smarce1O54941 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smarce1O54941 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smarce1O54941 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smarce1O54941 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smarce1O54941 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smarce1O54941 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC19.4■□□□□ 0.7
Smarce1O54941 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smarce1O54941 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smarce1O54941 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Smarce1O54941 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smarce1O54941 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
Smarce1O54941 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Smarce1O54941 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
Smarce1O54941 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
Smarce1O54941 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Smarce1O54941 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Smarce1O54941 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Smarce1O54941 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Smarce1O54941 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Smarce1O54941 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Smarce1O54941 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC19.39■□□□□ 0.69
Smarce1O54941 Gm44450-201ENSMUST00000199528 114 ntBASIC19.39■□□□□ 0.69
Smarce1O54941 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Smarce1O54941 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Smarce1O54941 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Smarce1O54941 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Smarce1O54941 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Smarce1O54941 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Smarce1O54941 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Smarce1O54941 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Smarce1O54941 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Smarce1O54941 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Smarce1O54941 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Smarce1O54941 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC19.39■□□□□ 0.69
Smarce1O54941 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Smarce1O54941 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Smarce1O54941 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Smarce1O54941 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Smarce1O54941 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Smarce1O54941 Gm13474-201ENSMUST00000122466 815 ntBASIC19.38■□□□□ 0.69
Smarce1O54941 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Smarce1O54941 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Smarce1O54941 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
Smarce1O54941 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC19.38■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms