Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 OR5H2-201ENST00000355273 945 ntBASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 Y_RNA.25-201ENST00000362528 102 ntBASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 PTMAP2-201ENST00000397627 327 ntBASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 AC110754.1-201ENST00000399740 601 ntBASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 RPS3AP37-201ENST00000419176 745 ntBASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 MRPS36P1-201ENST00000421291 307 ntBASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 HSFY1P1-201ENST00000423928 1178 ntBASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 AL359073.1-201ENST00000448036 403 ntBASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 PNPLA4P1-201ENST00000458328 305 ntBASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 RPL21P10-201ENST00000463521 490 ntBASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 AC069528.1-202ENST00000482888 637 ntBASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 RN7SL633P-201ENST00000488974 297 ntBASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 AC113347.3-201ENST00000509113 148 ntBASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 OR5AK1P-201ENST00000524837 922 ntBASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 HSPE1P20-201ENST00000538133 289 ntBASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 AL132657.2-201ENST00000564417 358 ntBASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 AC006130.2-201ENST00000586202 326 ntBASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 AC245884.10-201ENST00000597355 337 ntBASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 AC128687.1-201ENST00000605304 619 ntBASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 MIR1322-201ENST00000638013 71 ntBASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.69□□□□□ -1.98
CCDC54Q8NEL0 GDI2P1-201ENST00000429312 1336 ntBASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 RPL23AP57-201ENST00000332361 466 ntBASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 SNORD51-201ENST00000384320 80 ntBASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 BX323014.1-201ENST00000412876 237 ntBASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 AC245052.5-201ENST00000416320 649 ntBASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 UBE2D3P2-201ENST00000424409 445 ntBASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 AC091286.1-201ENST00000431233 461 ntBASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 MTCYBP45-201ENST00000435243 565 ntBASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 MTCO2P20-201ENST00000437339 673 ntBASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 AC006028.1-201ENST00000438379 402 ntBASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 AL589880.1-201ENST00000448271 287 ntBASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 CYCSP35-201ENST00000451978 304 ntBASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 RPL18AP17-201ENST00000455326 198 ntBASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 AC108734.3-201ENST00000481241 1165 ntBASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 AC006499.2-201ENST00000513470 337 ntBASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 ERHP1-201ENST00000523006 310 ntBASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 LRRC6P1-201ENST00000532188 885 ntBASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 AC005832.3-201ENST00000537929 631 ntBASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 AC107016.2-201ENST00000547968 190 ntBASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 DNAJC8P1-201ENST00000554535 372 ntBASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 AADACP1-206ENST00000561502 1193 ntBASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 CCDC58P3-201ENST00000590792 430 ntBASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 AC009220.3-201ENST00000604318 586 ntBASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 RPL23AP88-201ENST00000605759 454 ntBASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 AC099506.2-201ENST00000623074 221 ntBASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 AP003122.6-201ENST00000623831 495 ntBASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 OR1S1-201ENST00000624470 978 ntBASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 MIR6733-201ENST00000635723 61 ntBASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 OR5BR1P-201ENST00000524992 1330 ntBASIC2.68□□□□□ -1.98
CCDC54Q8NEL0 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 RNA5SP479-201ENST00000364858 117 ntBASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 TMSB4XP8-201ENST00000402089 135 ntBASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.67□□□□□ -1.98
CCDC54Q8NEL0 AL136310.1-201ENST00000404926 654 ntBASIC2.67□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms