Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 DEFA7P-201ENST00000382676 285 ntBASIC1.32□□□□□ -2.2
COL7A1Q02388 TPMTP3-201ENST00000411928 735 ntBASIC1.32□□□□□ -2.2
COL7A1Q02388 RWDD4P2-201ENST00000426392 563 ntBASIC1.32□□□□□ -2.2
COL7A1Q02388 TRIM60P13-201ENST00000432350 1283 ntBASIC1.32□□□□□ -2.2
COL7A1Q02388 RWDD4P1-201ENST00000488019 565 ntBASIC1.32□□□□□ -2.2
COL7A1Q02388 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC1.32□□□□□ -2.2
COL7A1Q02388 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC1.32□□□□□ -2.2
COL7A1Q02388 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC1.32□□□□□ -2.2
COL7A1Q02388 NDUFB4P9-201ENST00000511646 388 ntBASIC1.32□□□□□ -2.2
COL7A1Q02388 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC1.32□□□□□ -2.2
COL7A1Q02388 MTCO3P13-201ENST00000577757 781 ntBASIC1.32□□□□□ -2.2
COL7A1Q02388 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC1.32□□□□□ -2.2
COL7A1Q02388 AC010297.1-201ENST00000623948 149 ntBASIC1.32□□□□□ -2.2
COL7A1Q02388 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.32□□□□□ -2.2
COL7A1Q02388 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.32□□□□□ -2.2
COL7A1Q02388 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC1.32□□□□□ -2.2
COL7A1Q02388 SDR42E1P3-201ENST00000438345 502 ntBASIC1.32□□□□□ -2.2
COL7A1Q02388 AL049830.2-201ENST00000480072 201 ntBASIC1.32□□□□□ -2.2
COL7A1Q02388 AC006390.1-201ENST00000508068 283 ntBASIC1.32□□□□□ -2.2
COL7A1Q02388 IGHV3-76-201ENST00000522465 295 ntBASIC1.32□□□□□ -2.2
COL7A1Q02388 5S_rRNA.12-201ENST00000617631 107 ntBASIC1.32□□□□□ -2.2
COL7A1Q02388 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC1.32□□□□□ -2.2
COL7A1Q02388 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC1.32□□□□□ -2.2
COL7A1Q02388 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
COL7A1Q02388 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC1.31□□□□□ -2.2
COL7A1Q02388 MUPP-201ENST00000438111 566 ntBASIC1.31□□□□□ -2.2
COL7A1Q02388 MED6P1-201ENST00000439659 713 ntBASIC1.31□□□□□ -2.2
COL7A1Q02388 USP9YP8-201ENST00000441913 500 ntBASIC1.31□□□□□ -2.2
COL7A1Q02388 AMD1P1-201ENST00000457220 922 ntBASIC1.31□□□□□ -2.2
COL7A1Q02388 GOLGA5P1-201ENST00000507317 980 ntBASIC1.31□□□□□ -2.2
COL7A1Q02388 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC1.31□□□□□ -2.2
COL7A1Q02388 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC1.31□□□□□ -2.2
COL7A1Q02388 IGHVIII-5-1-201ENST00000523059 99 ntBASIC1.31□□□□□ -2.2
COL7A1Q02388 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC1.31□□□□□ -2.2
COL7A1Q02388 AC008015.1-201ENST00000555505 465 ntBASIC1.31□□□□□ -2.2
COL7A1Q02388 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC1.31□□□□□ -2.2
COL7A1Q02388 PSMA6P4-201ENST00000603247 718 ntBASIC1.31□□□□□ -2.2
COL7A1Q02388 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC1.31□□□□□ -2.2
COL7A1Q02388 AC092881.1-201ENST00000638218 2733 ntBASIC1.31□□□□□ -2.2
COL7A1Q02388 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
COL7A1Q02388 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC1.31□□□□□ -2.2
COL7A1Q02388 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
COL7A1Q02388 Y_RNA.251-201ENST00000364551 99 ntBASIC1.31□□□□□ -2.2
COL7A1Q02388 DYNLT3P1-201ENST00000378574 347 ntBASIC1.31□□□□□ -2.2
COL7A1Q02388 RNU6-1027P-201ENST00000383998 107 ntBASIC1.31□□□□□ -2.2
COL7A1Q02388 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC1.31□□□□□ -2.2
COL7A1Q02388 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC1.31□□□□□ -2.2
COL7A1Q02388 AL353093.1-201ENST00000441292 436 ntBASIC1.31□□□□□ -2.2
COL7A1Q02388 AF131216.2-201ENST00000512316 564 ntBASIC1.31□□□□□ -2.2
COL7A1Q02388 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC1.31□□□□□ -2.2
COL7A1Q02388 RNA5SP337-201ENST00000517007 109 ntBASIC1.31□□□□□ -2.2
COL7A1Q02388 AC107918.3-201ENST00000533272 382 ntBASIC1.31□□□□□ -2.2
COL7A1Q02388 AL031274.2-201ENST00000599419 203 ntBASIC1.31□□□□□ -2.2
COL7A1Q02388 MIR6734-201ENST00000621166 68 ntBASIC1.31□□□□□ -2.2
COL7A1Q02388 MIR6715B-201ENST00000637172 77 ntBASIC1.31□□□□□ -2.2
COL7A1Q02388 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.31□□□□□ -2.2
COL7A1Q02388 MIR96-201ENST00000362288 78 ntBASIC1.3□□□□□ -2.2
COL7A1Q02388 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
COL7A1Q02388 RNU2-20P-201ENST00000410425 191 ntBASIC1.3□□□□□ -2.2
COL7A1Q02388 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC1.3□□□□□ -2.2
COL7A1Q02388 AC017099.1-201ENST00000448261 1028 ntBASIC1.3□□□□□ -2.2
COL7A1Q02388 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC1.3□□□□□ -2.2
COL7A1Q02388 AC104564.1-201ENST00000493028 407 ntBASIC1.3□□□□□ -2.2
COL7A1Q02388 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.3□□□□□ -2.2
COL7A1Q02388 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.3□□□□□ -2.2
COL7A1Q02388 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.3□□□□□ -2.2
COL7A1Q02388 AC007536.1-201ENST00000533382 349 ntBASIC1.3□□□□□ -2.2
COL7A1Q02388 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC1.3□□□□□ -2.2
COL7A1Q02388 AL627230.5-201ENST00000619807 58 ntBASIC1.3□□□□□ -2.2
COL7A1Q02388 MTCO1P4-201ENST00000520516 1409 ntBASIC1.3□□□□□ -2.2
COL7A1Q02388 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
COL7A1Q02388 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.3□□□□□ -2.2
COL7A1Q02388 AL592437.2-201ENST00000421655 2434 ntBASIC1.3□□□□□ -2.2
COL7A1Q02388 MAPK10-266ENST00000641066 6555 ntBASIC1.3□□□□□ -2.2
COL7A1Q02388 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.3□□□□□ -2.2
COL7A1Q02388 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC1.3□□□□□ -2.2
COL7A1Q02388 MIR365B-201ENST00000362317 111 ntBASIC1.3□□□□□ -2.2
COL7A1Q02388 SNORA31-201ENST00000362607 130 ntBASIC1.3□□□□□ -2.2
COL7A1Q02388 RNA5SP344-201ENST00000411081 104 ntBASIC1.3□□□□□ -2.2
COL7A1Q02388 AL513331.1-201ENST00000411908 397 ntBASIC1.3□□□□□ -2.2
COL7A1Q02388 KATNBL1P3-201ENST00000443475 909 ntBASIC1.3□□□□□ -2.2
COL7A1Q02388 AC107393.1-201ENST00000512403 346 ntBASIC1.3□□□□□ -2.2
COL7A1Q02388 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC1.3□□□□□ -2.2
COL7A1Q02388 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC1.3□□□□□ -2.2
COL7A1Q02388 HPVC1-201ENST00000629899 1198 ntBASIC1.3□□□□□ -2.2
COL7A1Q02388 MIR6767-201ENST00000637302 66 ntBASIC1.3□□□□□ -2.2
COL7A1Q02388 AC091152.2-201ENST00000591628 2569 ntBASIC1.3□□□□□ -2.2
COL7A1Q02388 Y_RNA.30-201ENST00000362572 97 ntBASIC1.29□□□□□ -2.2
COL7A1Q02388 RNU6-37P-201ENST00000362692 107 ntBASIC1.29□□□□□ -2.2
COL7A1Q02388 RNU6-11P-201ENST00000364234 107 ntBASIC1.29□□□□□ -2.2
COL7A1Q02388 RNA5SP239-201ENST00000410218 129 ntBASIC1.29□□□□□ -2.2
COL7A1Q02388 RNU2-32P-201ENST00000411193 191 ntBASIC1.29□□□□□ -2.2
COL7A1Q02388 ARF4P2-201ENST00000430209 526 ntBASIC1.29□□□□□ -2.2
COL7A1Q02388 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC1.29□□□□□ -2.2
COL7A1Q02388 snoU109.4-201ENST00000458953 143 ntBASIC1.29□□□□□ -2.2
COL7A1Q02388 AC079804.2-201ENST00000490376 200 ntBASIC1.29□□□□□ -2.2
COL7A1Q02388 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC1.29□□□□□ -2.2
COL7A1Q02388 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC1.29□□□□□ -2.2
COL7A1Q02388 AL160237.3-201ENST00000604114 1013 ntBASIC1.29□□□□□ -2.2
COL7A1Q02388 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC1.29□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 93.6 ms