Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC022509.4-201ENST00000621404 572 ntBASIC3.41□□□□□ -1.86
VPS39Q96JC1 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.41□□□□□ -1.86
VPS39Q96JC1 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.41□□□□□ -1.86
VPS39Q96JC1 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.41□□□□□ -1.86
VPS39Q96JC1 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
VPS39Q96JC1 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.86
VPS39Q96JC1 MTCO1P23-201ENST00000415223 1526 ntBASIC3.4□□□□□ -1.86
VPS39Q96JC1 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.86
VPS39Q96JC1 RNU6-1257P-201ENST00000384625 110 ntBASIC3.4□□□□□ -1.87
VPS39Q96JC1 SKINT1L-201ENST00000401057 817 ntBASIC3.4□□□□□ -1.87
VPS39Q96JC1 BOLA3P4-201ENST00000418151 400 ntBASIC3.4□□□□□ -1.87
VPS39Q96JC1 AC027644.1-201ENST00000419595 298 ntBASIC3.4□□□□□ -1.87
VPS39Q96JC1 AC013410.2-201ENST00000422627 201 ntBASIC3.4□□□□□ -1.87
VPS39Q96JC1 AL354692.1-201ENST00000423044 315 ntBASIC3.4□□□□□ -1.87
VPS39Q96JC1 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS39Q96JC1 C1DP1-201ENST00000426049 402 ntBASIC3.4□□□□□ -1.87
VPS39Q96JC1 AC092634.2-201ENST00000428146 1010 ntBASIC3.4□□□□□ -1.87
VPS39Q96JC1 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS39Q96JC1 AC004866.2-201ENST00000438285 481 ntBASIC3.4□□□□□ -1.87
VPS39Q96JC1 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
VPS39Q96JC1 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC3.4□□□□□ -1.87
VPS39Q96JC1 CDC27P1-201ENST00000445384 715 ntBASIC3.4□□□□□ -1.87
VPS39Q96JC1 OR6K5P-201ENST00000447050 945 ntBASIC3.4□□□□□ -1.87
VPS39Q96JC1 AL589880.1-201ENST00000448271 287 ntBASIC3.4□□□□□ -1.87
VPS39Q96JC1 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.4□□□□□ -1.87
VPS39Q96JC1 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.87
VPS39Q96JC1 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS39Q96JC1 AC020898.1-201ENST00000474167 787 ntBASIC3.4□□□□□ -1.87
VPS39Q96JC1 KLRA1P-201ENST00000503499 986 ntBASIC3.4□□□□□ -1.87
VPS39Q96JC1 BOLA3P3-201ENST00000505182 232 ntBASIC3.4□□□□□ -1.87
VPS39Q96JC1 CBX3P3-201ENST00000508108 532 ntBASIC3.4□□□□□ -1.87
VPS39Q96JC1 PHBP14-201ENST00000512887 367 ntBASIC3.4□□□□□ -1.87
VPS39Q96JC1 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
VPS39Q96JC1 OR8I1P-201ENST00000529291 931 ntBASIC3.4□□□□□ -1.87
VPS39Q96JC1 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC3.4□□□□□ -1.87
VPS39Q96JC1 AC004024.1-201ENST00000549244 247 ntBASIC3.4□□□□□ -1.87
VPS39Q96JC1 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS39Q96JC1 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS39Q96JC1 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC3.4□□□□□ -1.87
VPS39Q96JC1 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS39Q96JC1 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC3.4□□□□□ -1.87
VPS39Q96JC1 AC006130.2-201ENST00000586202 326 ntBASIC3.4□□□□□ -1.87
VPS39Q96JC1 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC3.4□□□□□ -1.87
VPS39Q96JC1 AP002907.1-201ENST00000606361 1430 ntBASIC3.4□□□□□ -1.87
VPS39Q96JC1 AL121772.2-201ENST00000614331 297 ntBASIC3.4□□□□□ -1.87
VPS39Q96JC1 AL356863.1-201ENST00000623378 1080 ntBASIC3.4□□□□□ -1.87
VPS39Q96JC1 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
VPS39Q96JC1 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC3.4□□□□□ -1.87
VPS39Q96JC1 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
VPS39Q96JC1 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
VPS39Q96JC1 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
VPS39Q96JC1 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.39□□□□□ -1.87
VPS39Q96JC1 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
VPS39Q96JC1 SNORA1.3-201ENST00000384676 136 ntBASIC3.39□□□□□ -1.87
VPS39Q96JC1 MIR122-201ENST00000385044 85 ntBASIC3.39□□□□□ -1.87
VPS39Q96JC1 MIR620-201ENST00000385232 95 ntBASIC3.39□□□□□ -1.87
VPS39Q96JC1 RPS4XP3-201ENST00000398541 413 ntBASIC3.39□□□□□ -1.87
VPS39Q96JC1 AL136372.1-201ENST00000403060 228 ntBASIC3.39□□□□□ -1.87
VPS39Q96JC1 RN7SKP111-201ENST00000410349 271 ntBASIC3.39□□□□□ -1.87
VPS39Q96JC1 RNU2-15P-201ENST00000410692 191 ntBASIC3.39□□□□□ -1.87
VPS39Q96JC1 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC3.39□□□□□ -1.87
VPS39Q96JC1 RPS7P13-201ENST00000413955 498 ntBASIC3.39□□□□□ -1.87
VPS39Q96JC1 AC092634.6-201ENST00000418558 192 ntBASIC3.39□□□□□ -1.87
VPS39Q96JC1 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC3.39□□□□□ -1.87
VPS39Q96JC1 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC3.39□□□□□ -1.87
VPS39Q96JC1 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC3.39□□□□□ -1.87
VPS39Q96JC1 MTCYBP15-201ENST00000433123 1127 ntBASIC3.39□□□□□ -1.87
VPS39Q96JC1 AL590664.1-201ENST00000448065 339 ntBASIC3.39□□□□□ -1.87
VPS39Q96JC1 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC3.39□□□□□ -1.87
VPS39Q96JC1 AL133547.1-201ENST00000448546 220 ntBASIC3.39□□□□□ -1.87
VPS39Q96JC1 HMGN1P18-201ENST00000457642 277 ntBASIC3.39□□□□□ -1.87
VPS39Q96JC1 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.39□□□□□ -1.87
VPS39Q96JC1 RPL30P14-201ENST00000482744 348 ntBASIC3.39□□□□□ -1.87
VPS39Q96JC1 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.39□□□□□ -1.87
VPS39Q96JC1 AC008427.1-201ENST00000503102 655 ntBASIC3.39□□□□□ -1.87
VPS39Q96JC1 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC3.39□□□□□ -1.87
VPS39Q96JC1 AC010625.1-201ENST00000511296 403 ntBASIC3.39□□□□□ -1.87
VPS39Q96JC1 AC093752.1-206ENST00000511823 336 ntBASIC3.39□□□□□ -1.87
VPS39Q96JC1 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC3.39□□□□□ -1.87
VPS39Q96JC1 RNU1-45P-201ENST00000517191 141 ntBASIC3.39□□□□□ -1.87
VPS39Q96JC1 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC3.39□□□□□ -1.87
VPS39Q96JC1 AC103843.2-201ENST00000530523 682 ntBASIC3.39□□□□□ -1.87
VPS39Q96JC1 ZKSCAN7P1-201ENST00000543668 673 ntBASIC3.39□□□□□ -1.87
VPS39Q96JC1 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.39□□□□□ -1.87
VPS39Q96JC1 AL845331.3-202ENST00000562856 261 ntBASIC3.39□□□□□ -1.87
VPS39Q96JC1 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC3.39□□□□□ -1.87
VPS39Q96JC1 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC3.39□□□□□ -1.87
VPS39Q96JC1 AL606834.3-201ENST00000602615 496 ntBASIC3.39□□□□□ -1.87
VPS39Q96JC1 AC106791.2-201ENST00000604680 391 ntBASIC3.39□□□□□ -1.87
VPS39Q96JC1 AP002802.2-201ENST00000605877 235 ntBASIC3.39□□□□□ -1.87
VPS39Q96JC1 AL121652.1-201ENST00000608851 448 ntBASIC3.39□□□□□ -1.87
VPS39Q96JC1 AC091046.2-201ENST00000620775 665 ntBASIC3.39□□□□□ -1.87
VPS39Q96JC1 AP003122.6-201ENST00000623831 495 ntBASIC3.39□□□□□ -1.87
VPS39Q96JC1 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
VPS39Q96JC1 AL513185.3-201ENST00000433335 1300 ntBASIC3.39□□□□□ -1.87
VPS39Q96JC1 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
VPS39Q96JC1 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
VPS39Q96JC1 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.38□□□□□ -1.87
VPS39Q96JC1 RNA5SP197-201ENST00000363357 119 ntBASIC3.38□□□□□ -1.87
VPS39Q96JC1 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms