Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Smc1aQ9CU62 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Smc1aQ9CU62 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Smc1aQ9CU62 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Smc1aQ9CU62 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Smc1aQ9CU62 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Smc1aQ9CU62 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Smc1aQ9CU62 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC18.31■□□□□ 0.52
Smc1aQ9CU62 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC18.31■□□□□ 0.52
Smc1aQ9CU62 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Smc1aQ9CU62 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC18.31■□□□□ 0.52
Smc1aQ9CU62 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Smc1aQ9CU62 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Smc1aQ9CU62 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Smc1aQ9CU62 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
Smc1aQ9CU62 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Smc1aQ9CU62 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Smc1aQ9CU62 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Smc1aQ9CU62 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Smc1aQ9CU62 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Smc1aQ9CU62 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Smc1aQ9CU62 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Smc1aQ9CU62 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
Smc1aQ9CU62 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Smc1aQ9CU62 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Smc1aQ9CU62 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Smc1aQ9CU62 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Smc1aQ9CU62 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC18.3■□□□□ 0.52
Smc1aQ9CU62 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC18.3■□□□□ 0.52
Smc1aQ9CU62 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
Smc1aQ9CU62 Gm7213-201ENSMUST00000215977 950 ntBASIC18.3■□□□□ 0.52
Smc1aQ9CU62 Il3ra-202ENSMUST00000223589 738 ntBASIC18.3■□□□□ 0.52
Smc1aQ9CU62 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Smc1aQ9CU62 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Smc1aQ9CU62 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Smc1aQ9CU62 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Smc1aQ9CU62 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Smc1aQ9CU62 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
Smc1aQ9CU62 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Smc1aQ9CU62 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Smc1aQ9CU62 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
Smc1aQ9CU62 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Smc1aQ9CU62 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Smc1aQ9CU62 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC18.29■□□□□ 0.52
Smc1aQ9CU62 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Smc1aQ9CU62 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Smc1aQ9CU62 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC18.29■□□□□ 0.52
Smc1aQ9CU62 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Smc1aQ9CU62 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
Smc1aQ9CU62 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Smc1aQ9CU62 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Smc1aQ9CU62 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Smc1aQ9CU62 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Smc1aQ9CU62 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Smc1aQ9CU62 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Smc1aQ9CU62 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
Smc1aQ9CU62 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Smc1aQ9CU62 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Smc1aQ9CU62 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Smc1aQ9CU62 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Smc1aQ9CU62 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Smc1aQ9CU62 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC18.28■□□□□ 0.52
Smc1aQ9CU62 Gm29518-201ENSMUST00000190858 372 ntBASIC18.28■□□□□ 0.52
Smc1aQ9CU62 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Smc1aQ9CU62 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Smc1aQ9CU62 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Smc1aQ9CU62 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Smc1aQ9CU62 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Smc1aQ9CU62 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Smc1aQ9CU62 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Smc1aQ9CU62 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Smc1aQ9CU62 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Smc1aQ9CU62 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Smc1aQ9CU62 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Smc1aQ9CU62 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Smc1aQ9CU62 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC18.27■□□□□ 0.52
Smc1aQ9CU62 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Smc1aQ9CU62 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Smc1aQ9CU62 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Smc1aQ9CU62 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Smc1aQ9CU62 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.52
Smc1aQ9CU62 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Smc1aQ9CU62 Gm17971-201ENSMUST00000190239 806 ntBASIC18.27■□□□□ 0.52
Smc1aQ9CU62 AC130713.1-201ENSMUST00000228853 1096 ntBASIC18.27■□□□□ 0.52
Smc1aQ9CU62 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Smc1aQ9CU62 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Smc1aQ9CU62 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Smc1aQ9CU62 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Smc1aQ9CU62 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Smc1aQ9CU62 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Smc1aQ9CU62 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Smc1aQ9CU62 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Smc1aQ9CU62 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Smc1aQ9CU62 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Smc1aQ9CU62 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Smc1aQ9CU62 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Smc1aQ9CU62 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Smc1aQ9CU62 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC18.26■□□□□ 0.51
Smc1aQ9CU62 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Smc1aQ9CU62 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 21.5 ms