Protein–RNA interactions for Protein: Q99K46

Usp11, Ubiquitin carboxyl-terminal hydrolase 11, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp11Q99K46 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Usp11Q99K46 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Usp11Q99K46 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Usp11Q99K46 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC17.28■□□□□ 0.36
Usp11Q99K46 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp11Q99K46 Gm16061-201ENSMUST00000122167 857 ntBASIC17.28■□□□□ 0.36
Usp11Q99K46 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
Usp11Q99K46 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Usp11Q99K46 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Usp11Q99K46 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Usp11Q99K46 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Usp11Q99K46 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp11Q99K46 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp11Q99K46 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Usp11Q99K46 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Usp11Q99K46 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC17.27■□□□□ 0.36
Usp11Q99K46 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Usp11Q99K46 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Usp11Q99K46 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC17.27■□□□□ 0.36
Usp11Q99K46 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Usp11Q99K46 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC17.27■□□□□ 0.36
Usp11Q99K46 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Usp11Q99K46 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Usp11Q99K46 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC17.27■□□□□ 0.36
Usp11Q99K46 Gm29994-201ENSMUST00000195495 1193 ntBASIC17.27■□□□□ 0.36
Usp11Q99K46 Gm45058-201ENSMUST00000205810 766 ntBASIC17.27■□□□□ 0.36
Usp11Q99K46 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Usp11Q99K46 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Usp11Q99K46 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC17.27■□□□□ 0.36
Usp11Q99K46 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Usp11Q99K46 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC17.27■□□□□ 0.35
Usp11Q99K46 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
Usp11Q99K46 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Usp11Q99K46 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Usp11Q99K46 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usp11Q99K46 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usp11Q99K46 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Usp11Q99K46 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Usp11Q99K46 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usp11Q99K46 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usp11Q99K46 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usp11Q99K46 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Usp11Q99K46 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC17.26■□□□□ 0.35
Usp11Q99K46 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC17.26■□□□□ 0.35
Usp11Q99K46 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Usp11Q99K46 Gm7370-201ENSMUST00000219471 767 ntBASIC17.26■□□□□ 0.35
Usp11Q99K46 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC17.26■□□□□ 0.35
Usp11Q99K46 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Usp11Q99K46 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usp11Q99K46 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usp11Q99K46 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usp11Q99K46 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usp11Q99K46 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usp11Q99K46 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Usp11Q99K46 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usp11Q99K46 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usp11Q99K46 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC17.26■□□□□ 0.35
Usp11Q99K46 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp11Q99K46 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp11Q99K46 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp11Q99K46 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp11Q99K46 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp11Q99K46 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp11Q99K46 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp11Q99K46 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC17.25■□□□□ 0.35
Usp11Q99K46 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp11Q99K46 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC17.25■□□□□ 0.35
Usp11Q99K46 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp11Q99K46 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp11Q99K46 Gm13836-201ENSMUST00000121159 501 ntBASIC17.25■□□□□ 0.35
Usp11Q99K46 Gm13474-201ENSMUST00000122466 815 ntBASIC17.25■□□□□ 0.35
Usp11Q99K46 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Usp11Q99K46 Mir5130-201ENSMUST00000175160 84 ntBASIC17.25■□□□□ 0.35
Usp11Q99K46 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC17.25■□□□□ 0.35
Usp11Q99K46 Gm10231-201ENSMUST00000181584 441 ntBASIC17.25■□□□□ 0.35
Usp11Q99K46 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp11Q99K46 Gm10175-202ENSMUST00000208752 441 ntBASIC17.25■□□□□ 0.35
Usp11Q99K46 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC17.25■□□□□ 0.35
Usp11Q99K46 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC17.25■□□□□ 0.35
Usp11Q99K46 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp11Q99K46 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp11Q99K46 Gm11620-201ENSMUST00000118770 1845 ntBASIC17.25■□□□□ 0.35
Usp11Q99K46 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp11Q99K46 Gm8839-201ENSMUST00000121279 1645 ntBASIC17.25■□□□□ 0.35
Usp11Q99K46 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Usp11Q99K46 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp11Q99K46 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp11Q99K46 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp11Q99K46 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp11Q99K46 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC17.24■□□□□ 0.35
Usp11Q99K46 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Usp11Q99K46 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Usp11Q99K46 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC17.24■□□□□ 0.35
Usp11Q99K46 AC158538.1-201ENSMUST00000225870 294 ntBASIC17.24■□□□□ 0.35
Usp11Q99K46 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp11Q99K46 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Usp11Q99K46 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Usp11Q99K46 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp11Q99K46 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp11Q99K46 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms