Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gm10566-201ENSMUST00000086739 996 ntBASIC18.34■□□□□ 0.53
Ushbp1Q8R370 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
Ushbp1Q8R370 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ushbp1Q8R370 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC18.34■□□□□ 0.53
Ushbp1Q8R370 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ushbp1Q8R370 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
Ushbp1Q8R370 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ushbp1Q8R370 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC18.34■□□□□ 0.53
Ushbp1Q8R370 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ushbp1Q8R370 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC18.34■□□□□ 0.53
Ushbp1Q8R370 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ushbp1Q8R370 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ushbp1Q8R370 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC18.33■□□□□ 0.53
Ushbp1Q8R370 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ushbp1Q8R370 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ushbp1Q8R370 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ushbp1Q8R370 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC18.33■□□□□ 0.52
Ushbp1Q8R370 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ushbp1Q8R370 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
Ushbp1Q8R370 Gm26039-201ENSMUST00000158152 144 ntBASIC18.33■□□□□ 0.52
Ushbp1Q8R370 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Ushbp1Q8R370 Otx2os1-206ENSMUST00000228153 787 ntBASIC18.33■□□□□ 0.52
Ushbp1Q8R370 Hivep3-201ENSMUST00000084306 2973 ntBASIC18.33■□□□□ 0.52
Ushbp1Q8R370 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ushbp1Q8R370 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Ushbp1Q8R370 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ushbp1Q8R370 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC18.33■□□□□ 0.52
Ushbp1Q8R370 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ushbp1Q8R370 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ushbp1Q8R370 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ushbp1Q8R370 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ushbp1Q8R370 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ushbp1Q8R370 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC18.32■□□□□ 0.52
Ushbp1Q8R370 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ushbp1Q8R370 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ushbp1Q8R370 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ushbp1Q8R370 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC18.32■□□□□ 0.52
Ushbp1Q8R370 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC18.32■□□□□ 0.52
Ushbp1Q8R370 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ushbp1Q8R370 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Ushbp1Q8R370 Zfp264-201ENSMUST00000208656 1563 ntBASIC18.32■□□□□ 0.52
Ushbp1Q8R370 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ushbp1Q8R370 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ushbp1Q8R370 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Ushbp1Q8R370 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Ushbp1Q8R370 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Ushbp1Q8R370 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ushbp1Q8R370 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ushbp1Q8R370 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ushbp1Q8R370 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ushbp1Q8R370 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
Ushbp1Q8R370 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ushbp1Q8R370 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Ushbp1Q8R370 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ushbp1Q8R370 Gm24589-201ENSMUST00000116692 94 ntBASIC18.31■□□□□ 0.52
Ushbp1Q8R370 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC18.31■□□□□ 0.52
Ushbp1Q8R370 Gm6623-201ENSMUST00000173570 544 ntBASIC18.31■□□□□ 0.52
Ushbp1Q8R370 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ushbp1Q8R370 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ushbp1Q8R370 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ushbp1Q8R370 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ushbp1Q8R370 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ushbp1Q8R370 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Ushbp1Q8R370 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ushbp1Q8R370 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ushbp1Q8R370 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ushbp1Q8R370 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ushbp1Q8R370 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ushbp1Q8R370 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ushbp1Q8R370 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ushbp1Q8R370 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ushbp1Q8R370 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Ushbp1Q8R370 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ushbp1Q8R370 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Ushbp1Q8R370 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ushbp1Q8R370 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ushbp1Q8R370 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC18.3■□□□□ 0.52
Ushbp1Q8R370 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ushbp1Q8R370 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ushbp1Q8R370 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ushbp1Q8R370 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC18.3■□□□□ 0.52
Ushbp1Q8R370 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ushbp1Q8R370 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ushbp1Q8R370 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ushbp1Q8R370 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC18.29■□□□□ 0.52
Ushbp1Q8R370 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ushbp1Q8R370 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ushbp1Q8R370 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ushbp1Q8R370 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ushbp1Q8R370 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Ushbp1Q8R370 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Ushbp1Q8R370 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ushbp1Q8R370 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ushbp1Q8R370 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Ushbp1Q8R370 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Ushbp1Q8R370 Gm27742-201ENSMUST00000184667 60 ntBASIC18.29■□□□□ 0.52
Ushbp1Q8R370 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC18.29■□□□□ 0.52
Ushbp1Q8R370 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC18.29■□□□□ 0.52
Ushbp1Q8R370 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC18.29■□□□□ 0.52
Ushbp1Q8R370 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms