Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Trim47Q8C0E3 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC18.12■□□□□ 0.49
Trim47Q8C0E3 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Trim47Q8C0E3 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Trim47Q8C0E3 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC18.11■□□□□ 0.49
Trim47Q8C0E3 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim47Q8C0E3 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Trim47Q8C0E3 Gm45774-201ENSMUST00000211992 2665 ntBASIC18.11■□□□□ 0.49
Trim47Q8C0E3 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Trim47Q8C0E3 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC18.11■□□□□ 0.49
Trim47Q8C0E3 CT009713.7-201ENSMUST00000224689 571 ntBASIC18.11■□□□□ 0.49
Trim47Q8C0E3 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim47Q8C0E3 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim47Q8C0E3 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC18.11■□□□□ 0.49
Trim47Q8C0E3 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim47Q8C0E3 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim47Q8C0E3 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim47Q8C0E3 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim47Q8C0E3 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
Trim47Q8C0E3 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Trim47Q8C0E3 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
Trim47Q8C0E3 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Trim47Q8C0E3 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim47Q8C0E3 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim47Q8C0E3 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim47Q8C0E3 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim47Q8C0E3 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim47Q8C0E3 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim47Q8C0E3 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Trim47Q8C0E3 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC18.1■□□□□ 0.49
Trim47Q8C0E3 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Trim47Q8C0E3 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC18.1■□□□□ 0.49
Trim47Q8C0E3 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Trim47Q8C0E3 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim47Q8C0E3 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
Trim47Q8C0E3 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim47Q8C0E3 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim47Q8C0E3 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Trim47Q8C0E3 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Trim47Q8C0E3 Gm13216-201ENSMUST00000117145 591 ntBASIC18.1■□□□□ 0.49
Trim47Q8C0E3 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim47Q8C0E3 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC18.1■□□□□ 0.49
Trim47Q8C0E3 AC153889.1-201ENSMUST00000219257 330 ntBASIC18.1■□□□□ 0.49
Trim47Q8C0E3 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim47Q8C0E3 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim47Q8C0E3 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim47Q8C0E3 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim47Q8C0E3 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Trim47Q8C0E3 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim47Q8C0E3 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Trim47Q8C0E3 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trim47Q8C0E3 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim47Q8C0E3 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trim47Q8C0E3 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Trim47Q8C0E3 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim47Q8C0E3 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Trim47Q8C0E3 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim47Q8C0E3 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Trim47Q8C0E3 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Trim47Q8C0E3 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim47Q8C0E3 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim47Q8C0E3 Spr-ps1-201ENSMUST00000089584 605 ntBASIC18.09■□□□□ 0.49
Trim47Q8C0E3 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC18.09■□□□□ 0.49
Trim47Q8C0E3 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim47Q8C0E3 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim47Q8C0E3 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim47Q8C0E3 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim47Q8C0E3 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim47Q8C0E3 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Trim47Q8C0E3 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trim47Q8C0E3 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trim47Q8C0E3 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trim47Q8C0E3 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trim47Q8C0E3 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trim47Q8C0E3 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim47Q8C0E3 Gm14464-201ENSMUST00000119658 1254 ntBASIC18.08■□□□□ 0.48
Trim47Q8C0E3 Gm27741-201ENSMUST00000185060 237 ntBASIC18.08■□□□□ 0.48
Trim47Q8C0E3 Gm34391-201ENSMUST00000203706 907 ntBASIC18.08■□□□□ 0.48
Trim47Q8C0E3 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim47Q8C0E3 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim47Q8C0E3 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
Trim47Q8C0E3 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim47Q8C0E3 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim47Q8C0E3 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim47Q8C0E3 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Trim47Q8C0E3 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim47Q8C0E3 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim47Q8C0E3 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Trim47Q8C0E3 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Trim47Q8C0E3 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim47Q8C0E3 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Trim47Q8C0E3 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Trim47Q8C0E3 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim47Q8C0E3 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
Trim47Q8C0E3 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim47Q8C0E3 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim47Q8C0E3 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Trim47Q8C0E3 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC18.07■□□□□ 0.48
Trim47Q8C0E3 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC18.07■□□□□ 0.48
Trim47Q8C0E3 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC18.07■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms