Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Trub1Q8C0D0 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trub1Q8C0D0 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
Trub1Q8C0D0 Gm10013-201ENSMUST00000106074 672 ntBASIC16.91■□□□□ 0.3
Trub1Q8C0D0 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Trub1Q8C0D0 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC16.91■□□□□ 0.3
Trub1Q8C0D0 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Trub1Q8C0D0 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Trub1Q8C0D0 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trub1Q8C0D0 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Trub1Q8C0D0 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trub1Q8C0D0 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Trub1Q8C0D0 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trub1Q8C0D0 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Trub1Q8C0D0 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trub1Q8C0D0 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trub1Q8C0D0 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trub1Q8C0D0 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trub1Q8C0D0 Gm14464-201ENSMUST00000119658 1254 ntBASIC16.89■□□□□ 0.29
Trub1Q8C0D0 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC16.89■□□□□ 0.29
Trub1Q8C0D0 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC16.89■□□□□ 0.29
Trub1Q8C0D0 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC16.89■□□□□ 0.29
Trub1Q8C0D0 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trub1Q8C0D0 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trub1Q8C0D0 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Trub1Q8C0D0 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trub1Q8C0D0 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trub1Q8C0D0 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Trub1Q8C0D0 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Trub1Q8C0D0 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trub1Q8C0D0 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC16.89■□□□□ 0.29
Trub1Q8C0D0 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trub1Q8C0D0 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Trub1Q8C0D0 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trub1Q8C0D0 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Trub1Q8C0D0 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC16.89■□□□□ 0.29
Trub1Q8C0D0 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trub1Q8C0D0 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trub1Q8C0D0 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trub1Q8C0D0 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trub1Q8C0D0 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trub1Q8C0D0 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trub1Q8C0D0 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Trub1Q8C0D0 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trub1Q8C0D0 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trub1Q8C0D0 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Trub1Q8C0D0 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trub1Q8C0D0 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trub1Q8C0D0 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Trub1Q8C0D0 Gm11860-201ENSMUST00000122346 1010 ntBASIC16.88■□□□□ 0.29
Trub1Q8C0D0 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC16.88■□□□□ 0.29
Trub1Q8C0D0 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Trub1Q8C0D0 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC16.88■□□□□ 0.29
Trub1Q8C0D0 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
Trub1Q8C0D0 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trub1Q8C0D0 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
Trub1Q8C0D0 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trub1Q8C0D0 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trub1Q8C0D0 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC16.87■□□□□ 0.29
Trub1Q8C0D0 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 31.4 ms