Protein–RNA interactions for Protein: Q8BXJ2

Trerf1, Transcriptional-regulating factor 1, mousemouse

Predictions only

Length 1,205 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trerf1Q8BXJ2 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Trerf1Q8BXJ2 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Trerf1Q8BXJ2 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trerf1Q8BXJ2 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trerf1Q8BXJ2 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trerf1Q8BXJ2 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trerf1Q8BXJ2 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trerf1Q8BXJ2 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trerf1Q8BXJ2 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trerf1Q8BXJ2 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trerf1Q8BXJ2 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trerf1Q8BXJ2 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
Trerf1Q8BXJ2 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trerf1Q8BXJ2 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Trerf1Q8BXJ2 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trerf1Q8BXJ2 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trerf1Q8BXJ2 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Trerf1Q8BXJ2 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trerf1Q8BXJ2 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trerf1Q8BXJ2 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trerf1Q8BXJ2 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC17.28■□□□□ 0.36
Trerf1Q8BXJ2 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trerf1Q8BXJ2 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trerf1Q8BXJ2 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trerf1Q8BXJ2 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trerf1Q8BXJ2 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trerf1Q8BXJ2 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trerf1Q8BXJ2 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trerf1Q8BXJ2 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
Trerf1Q8BXJ2 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trerf1Q8BXJ2 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Trerf1Q8BXJ2 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Trerf1Q8BXJ2 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Trerf1Q8BXJ2 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Trerf1Q8BXJ2 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trerf1Q8BXJ2 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Trerf1Q8BXJ2 Gm18958-201ENSMUST00000174258 762 ntBASIC17.27■□□□□ 0.36
Trerf1Q8BXJ2 Mir5130-201ENSMUST00000175160 84 ntBASIC17.27■□□□□ 0.36
Trerf1Q8BXJ2 Gm27000-201ENSMUST00000182943 842 ntBASIC17.27■□□□□ 0.36
Trerf1Q8BXJ2 Gm7370-201ENSMUST00000219471 767 ntBASIC17.27■□□□□ 0.36
Trerf1Q8BXJ2 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC17.27■□□□□ 0.36
Trerf1Q8BXJ2 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.36
Trerf1Q8BXJ2 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Trerf1Q8BXJ2 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
Trerf1Q8BXJ2 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trerf1Q8BXJ2 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trerf1Q8BXJ2 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trerf1Q8BXJ2 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trerf1Q8BXJ2 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trerf1Q8BXJ2 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trerf1Q8BXJ2 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trerf1Q8BXJ2 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trerf1Q8BXJ2 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trerf1Q8BXJ2 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trerf1Q8BXJ2 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trerf1Q8BXJ2 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trerf1Q8BXJ2 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trerf1Q8BXJ2 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trerf1Q8BXJ2 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Trerf1Q8BXJ2 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trerf1Q8BXJ2 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trerf1Q8BXJ2 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trerf1Q8BXJ2 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Trerf1Q8BXJ2 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trerf1Q8BXJ2 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trerf1Q8BXJ2 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trerf1Q8BXJ2 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trerf1Q8BXJ2 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trerf1Q8BXJ2 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Trerf1Q8BXJ2 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trerf1Q8BXJ2 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC17.25■□□□□ 0.35
Trerf1Q8BXJ2 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trerf1Q8BXJ2 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trerf1Q8BXJ2 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trerf1Q8BXJ2 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trerf1Q8BXJ2 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
Trerf1Q8BXJ2 Gm16061-201ENSMUST00000122167 857 ntBASIC17.25■□□□□ 0.35
Trerf1Q8BXJ2 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Trerf1Q8BXJ2 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC17.25■□□□□ 0.35
Trerf1Q8BXJ2 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Trerf1Q8BXJ2 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trerf1Q8BXJ2 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trerf1Q8BXJ2 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trerf1Q8BXJ2 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trerf1Q8BXJ2 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
Trerf1Q8BXJ2 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trerf1Q8BXJ2 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trerf1Q8BXJ2 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trerf1Q8BXJ2 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC17.25■□□□□ 0.35
Trerf1Q8BXJ2 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trerf1Q8BXJ2 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Trerf1Q8BXJ2 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trerf1Q8BXJ2 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trerf1Q8BXJ2 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trerf1Q8BXJ2 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trerf1Q8BXJ2 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trerf1Q8BXJ2 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trerf1Q8BXJ2 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trerf1Q8BXJ2 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trerf1Q8BXJ2 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 31.4 ms