Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.18
Usp40Q8BWR4 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.18
Usp40Q8BWR4 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Usp40Q8BWR4 Mir6404-201ENSMUST00000183699 94 ntBASIC22.39■■□□□ 1.17
Usp40Q8BWR4 Gm9172-201ENSMUST00000212092 954 ntBASIC22.39■■□□□ 1.17
Usp40Q8BWR4 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Usp40Q8BWR4 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Usp40Q8BWR4 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Usp40Q8BWR4 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC22.39■■□□□ 1.17
Usp40Q8BWR4 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.17
Usp40Q8BWR4 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC22.39■■□□□ 1.17
Usp40Q8BWR4 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Usp40Q8BWR4 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Usp40Q8BWR4 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Usp40Q8BWR4 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC22.38■■□□□ 1.17
Usp40Q8BWR4 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Usp40Q8BWR4 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Usp40Q8BWR4 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
Usp40Q8BWR4 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Usp40Q8BWR4 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Usp40Q8BWR4 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Usp40Q8BWR4 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC22.38■■□□□ 1.17
Usp40Q8BWR4 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC22.38■■□□□ 1.17
Usp40Q8BWR4 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Usp40Q8BWR4 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC22.38■■□□□ 1.17
Usp40Q8BWR4 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC22.38■■□□□ 1.17
Usp40Q8BWR4 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Usp40Q8BWR4 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC22.38■■□□□ 1.17
Usp40Q8BWR4 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC22.38■■□□□ 1.17
Usp40Q8BWR4 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Usp40Q8BWR4 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
Usp40Q8BWR4 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC22.38■■□□□ 1.17
Usp40Q8BWR4 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Usp40Q8BWR4 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Usp40Q8BWR4 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Usp40Q8BWR4 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Usp40Q8BWR4 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC22.37■■□□□ 1.17
Usp40Q8BWR4 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC22.37■■□□□ 1.17
Usp40Q8BWR4 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC22.37■■□□□ 1.17
Usp40Q8BWR4 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC22.37■■□□□ 1.17
Usp40Q8BWR4 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Usp40Q8BWR4 Gm6089-201ENSMUST00000197666 938 ntBASIC22.37■■□□□ 1.17
Usp40Q8BWR4 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC22.37■■□□□ 1.17
Usp40Q8BWR4 Gm8655-201ENSMUST00000221159 852 ntBASIC22.37■■□□□ 1.17
Usp40Q8BWR4 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Usp40Q8BWR4 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Usp40Q8BWR4 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Usp40Q8BWR4 Ddx41-204ENSMUST00000224765 2199 ntBASIC22.37■■□□□ 1.17
Usp40Q8BWR4 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Usp40Q8BWR4 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
Usp40Q8BWR4 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC22.37■■□□□ 1.17
Usp40Q8BWR4 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
Usp40Q8BWR4 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Usp40Q8BWR4 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
Usp40Q8BWR4 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Usp40Q8BWR4 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Usp40Q8BWR4 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Usp40Q8BWR4 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
Usp40Q8BWR4 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
Usp40Q8BWR4 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Usp40Q8BWR4 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Usp40Q8BWR4 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC22.36■■□□□ 1.17
Usp40Q8BWR4 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Usp40Q8BWR4 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Usp40Q8BWR4 Gm15173-201ENSMUST00000122049 433 ntBASIC22.36■■□□□ 1.17
Usp40Q8BWR4 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Usp40Q8BWR4 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Usp40Q8BWR4 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC22.36■■□□□ 1.17
Usp40Q8BWR4 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC22.36■■□□□ 1.17
Usp40Q8BWR4 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Usp40Q8BWR4 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Usp40Q8BWR4 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Usp40Q8BWR4 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Usp40Q8BWR4 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Usp40Q8BWR4 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Usp40Q8BWR4 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC22.36■■□□□ 1.17
Usp40Q8BWR4 AC154527.4-201ENSMUST00000224364 1667 ntBASIC22.36■■□□□ 1.17
Usp40Q8BWR4 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Usp40Q8BWR4 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Usp40Q8BWR4 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC22.35■■□□□ 1.17
Usp40Q8BWR4 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
Usp40Q8BWR4 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Usp40Q8BWR4 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
Usp40Q8BWR4 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC22.35■■□□□ 1.17
Usp40Q8BWR4 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Usp40Q8BWR4 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC22.35■■□□□ 1.17
Usp40Q8BWR4 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC22.35■■□□□ 1.17
Usp40Q8BWR4 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Usp40Q8BWR4 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Usp40Q8BWR4 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Usp40Q8BWR4 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Usp40Q8BWR4 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC22.35■■□□□ 1.17
Usp40Q8BWR4 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Usp40Q8BWR4 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
Usp40Q8BWR4 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC22.35■■□□□ 1.17
Usp40Q8BWR4 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Usp40Q8BWR4 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Usp40Q8BWR4 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
Usp40Q8BWR4 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Usp40Q8BWR4 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms