Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim56Q80VI1 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim56Q80VI1 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim56Q80VI1 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim56Q80VI1 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim56Q80VI1 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim56Q80VI1 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
Trim56Q80VI1 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim56Q80VI1 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim56Q80VI1 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim56Q80VI1 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim56Q80VI1 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim56Q80VI1 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
Trim56Q80VI1 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim56Q80VI1 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim56Q80VI1 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim56Q80VI1 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim56Q80VI1 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trim56Q80VI1 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trim56Q80VI1 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC19.3■□□□□ 0.68
Trim56Q80VI1 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim56Q80VI1 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Trim56Q80VI1 Gm26917-202ENSMUST00000192833 3329 ntBASIC19.3■□□□□ 0.68
Trim56Q80VI1 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim56Q80VI1 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Trim56Q80VI1 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Trim56Q80VI1 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim56Q80VI1 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim56Q80VI1 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim56Q80VI1 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trim56Q80VI1 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim56Q80VI1 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Trim56Q80VI1 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC19.29■□□□□ 0.68
Trim56Q80VI1 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trim56Q80VI1 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim56Q80VI1 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trim56Q80VI1 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim56Q80VI1 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trim56Q80VI1 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trim56Q80VI1 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC19.29■□□□□ 0.68
Trim56Q80VI1 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trim56Q80VI1 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim56Q80VI1 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC19.28■□□□□ 0.68
Trim56Q80VI1 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim56Q80VI1 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Trim56Q80VI1 Gm32996-201ENSMUST00000199828 1447 ntBASIC19.28■□□□□ 0.68
Trim56Q80VI1 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Trim56Q80VI1 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim56Q80VI1 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC19.28■□□□□ 0.68
Trim56Q80VI1 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
Trim56Q80VI1 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC19.28■□□□□ 0.68
Trim56Q80VI1 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Trim56Q80VI1 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Trim56Q80VI1 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim56Q80VI1 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
Trim56Q80VI1 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Trim56Q80VI1 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim56Q80VI1 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim56Q80VI1 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim56Q80VI1 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim56Q80VI1 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim56Q80VI1 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim56Q80VI1 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim56Q80VI1 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Trim56Q80VI1 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim56Q80VI1 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Trim56Q80VI1 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
Trim56Q80VI1 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim56Q80VI1 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim56Q80VI1 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Trim56Q80VI1 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim56Q80VI1 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim56Q80VI1 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC19.27■□□□□ 0.68
Trim56Q80VI1 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim56Q80VI1 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim56Q80VI1 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trim56Q80VI1 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trim56Q80VI1 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trim56Q80VI1 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trim56Q80VI1 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Trim56Q80VI1 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trim56Q80VI1 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trim56Q80VI1 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim56Q80VI1 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trim56Q80VI1 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim56Q80VI1 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trim56Q80VI1 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim56Q80VI1 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim56Q80VI1 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC19.26■□□□□ 0.67
Trim56Q80VI1 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim56Q80VI1 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim56Q80VI1 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim56Q80VI1 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim56Q80VI1 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
Trim56Q80VI1 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Trim56Q80VI1 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim56Q80VI1 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trim56Q80VI1 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim56Q80VI1 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim56Q80VI1 Gm20628-201ENSMUST00000177363 3215 ntBASIC19.25■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 30.2 ms