Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Gm37856-201ENSMUST00000191634 999 ntBASIC16.19■□□□□ 0.18
Scaf4Q6PFF0 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Scaf4Q6PFF0 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scaf4Q6PFF0 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Scaf4Q6PFF0 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
Scaf4Q6PFF0 Gm7712-202ENSMUST00000222331 1510 ntBASIC16.19■□□□□ 0.18
Scaf4Q6PFF0 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scaf4Q6PFF0 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Scaf4Q6PFF0 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scaf4Q6PFF0 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC16.19■□□□□ 0.18
Scaf4Q6PFF0 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Scaf4Q6PFF0 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Scaf4Q6PFF0 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Scaf4Q6PFF0 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scaf4Q6PFF0 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scaf4Q6PFF0 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC16.18■□□□□ 0.18
Scaf4Q6PFF0 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Scaf4Q6PFF0 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Scaf4Q6PFF0 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC16.18■□□□□ 0.18
Scaf4Q6PFF0 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scaf4Q6PFF0 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scaf4Q6PFF0 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Scaf4Q6PFF0 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scaf4Q6PFF0 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Scaf4Q6PFF0 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scaf4Q6PFF0 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scaf4Q6PFF0 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Scaf4Q6PFF0 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scaf4Q6PFF0 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
Scaf4Q6PFF0 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Scaf4Q6PFF0 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scaf4Q6PFF0 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scaf4Q6PFF0 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scaf4Q6PFF0 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
Scaf4Q6PFF0 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Scaf4Q6PFF0 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scaf4Q6PFF0 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scaf4Q6PFF0 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scaf4Q6PFF0 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Scaf4Q6PFF0 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scaf4Q6PFF0 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scaf4Q6PFF0 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scaf4Q6PFF0 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Scaf4Q6PFF0 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scaf4Q6PFF0 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Scaf4Q6PFF0 Gm15378-201ENSMUST00000121894 207 ntBASIC16.17■□□□□ 0.18
Scaf4Q6PFF0 Gm10698-201ENSMUST00000182663 604 ntBASIC16.17■□□□□ 0.18
Scaf4Q6PFF0 Trmt13-210ENSMUST00000198454 880 ntBASIC16.17■□□□□ 0.18
Scaf4Q6PFF0 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC16.17■□□□□ 0.18
Scaf4Q6PFF0 AC159205.3-201ENSMUST00000224614 874 ntBASIC16.17■□□□□ 0.18
Scaf4Q6PFF0 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scaf4Q6PFF0 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scaf4Q6PFF0 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scaf4Q6PFF0 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC16.17■□□□□ 0.18
Scaf4Q6PFF0 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scaf4Q6PFF0 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC16.17■□□□□ 0.18
Scaf4Q6PFF0 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scaf4Q6PFF0 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC16.17■□□□□ 0.18
Scaf4Q6PFF0 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scaf4Q6PFF0 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Scaf4Q6PFF0 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scaf4Q6PFF0 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC16.16■□□□□ 0.18
Scaf4Q6PFF0 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Scaf4Q6PFF0 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Scaf4Q6PFF0 Actl10-202ENSMUST00000226583 1501 ntBASIC16.16■□□□□ 0.18
Scaf4Q6PFF0 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Scaf4Q6PFF0 Gm5643-201ENSMUST00000117081 966 ntBASIC16.16■□□□□ 0.18
Scaf4Q6PFF0 Gm12441-201ENSMUST00000121806 588 ntBASIC16.16■□□□□ 0.18
Scaf4Q6PFF0 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Scaf4Q6PFF0 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC16.16■□□□□ 0.18
Scaf4Q6PFF0 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC16.16■□□□□ 0.18
Scaf4Q6PFF0 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scaf4Q6PFF0 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scaf4Q6PFF0 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scaf4Q6PFF0 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Scaf4Q6PFF0 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scaf4Q6PFF0 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scaf4Q6PFF0 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Scaf4Q6PFF0 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC16.16■□□□□ 0.18
Scaf4Q6PFF0 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scaf4Q6PFF0 AC154855.1-201ENSMUST00000227353 1458 ntBASIC16.16■□□□□ 0.18
Scaf4Q6PFF0 Gm6190-201ENSMUST00000220683 1374 ntBASIC16.15■□□□□ 0.18
Scaf4Q6PFF0 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Scaf4Q6PFF0 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC16.15■□□□□ 0.18
Scaf4Q6PFF0 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scaf4Q6PFF0 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC16.15■□□□□ 0.18
Scaf4Q6PFF0 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scaf4Q6PFF0 Gm7791-201ENSMUST00000219066 539 ntBASIC16.15■□□□□ 0.18
Scaf4Q6PFF0 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scaf4Q6PFF0 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scaf4Q6PFF0 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scaf4Q6PFF0 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Scaf4Q6PFF0 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scaf4Q6PFF0 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scaf4Q6PFF0 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scaf4Q6PFF0 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scaf4Q6PFF0 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scaf4Q6PFF0 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scaf4Q6PFF0 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Scaf4Q6PFF0 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms