Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Hmgb4Q6P8W9 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC17.13■□□□□ 0.33
Hmgb4Q6P8W9 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC17.13■□□□□ 0.33
Hmgb4Q6P8W9 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
Hmgb4Q6P8W9 Gm44771-201ENSMUST00000206975 626 ntBASIC17.13■□□□□ 0.33
Hmgb4Q6P8W9 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC17.13■□□□□ 0.33
Hmgb4Q6P8W9 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Hmgb4Q6P8W9 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Hmgb4Q6P8W9 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC17.13■□□□□ 0.33
Hmgb4Q6P8W9 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Hmgb4Q6P8W9 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Hmgb4Q6P8W9 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Hmgb4Q6P8W9 Gm6190-201ENSMUST00000220683 1374 ntBASIC17.13■□□□□ 0.33
Hmgb4Q6P8W9 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Hmgb4Q6P8W9 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb4Q6P8W9 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb4Q6P8W9 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Hmgb4Q6P8W9 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb4Q6P8W9 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb4Q6P8W9 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
Hmgb4Q6P8W9 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC17.12■□□□□ 0.33
Hmgb4Q6P8W9 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb4Q6P8W9 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb4Q6P8W9 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC17.12■□□□□ 0.33
Hmgb4Q6P8W9 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb4Q6P8W9 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Hmgb4Q6P8W9 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC17.12■□□□□ 0.33
Hmgb4Q6P8W9 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb4Q6P8W9 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb4Q6P8W9 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb4Q6P8W9 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb4Q6P8W9 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hmgb4Q6P8W9 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb4Q6P8W9 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb4Q6P8W9 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb4Q6P8W9 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb4Q6P8W9 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb4Q6P8W9 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb4Q6P8W9 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC17.11■□□□□ 0.33
Hmgb4Q6P8W9 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC17.11■□□□□ 0.33
Hmgb4Q6P8W9 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb4Q6P8W9 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb4Q6P8W9 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb4Q6P8W9 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb4Q6P8W9 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb4Q6P8W9 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb4Q6P8W9 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb4Q6P8W9 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb4Q6P8W9 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb4Q6P8W9 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb4Q6P8W9 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb4Q6P8W9 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb4Q6P8W9 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Hmgb4Q6P8W9 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb4Q6P8W9 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hmgb4Q6P8W9 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC17.11■□□□□ 0.33
Hmgb4Q6P8W9 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb4Q6P8W9 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Hmgb4Q6P8W9 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb4Q6P8W9 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb4Q6P8W9 Gm12895-201ENSMUST00000122214 226 ntBASIC17.1■□□□□ 0.33
Hmgb4Q6P8W9 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb4Q6P8W9 Gm5864-201ENSMUST00000202263 970 ntBASIC17.1■□□□□ 0.33
Hmgb4Q6P8W9 Birc2-201ENSMUST00000054878 378 ntBASIC17.1■□□□□ 0.33
Hmgb4Q6P8W9 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb4Q6P8W9 Gm16499-203ENSMUST00000204633 2177 ntBASIC17.1■□□□□ 0.33
Hmgb4Q6P8W9 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb4Q6P8W9 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb4Q6P8W9 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
Hmgb4Q6P8W9 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb4Q6P8W9 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb4Q6P8W9 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Hmgb4Q6P8W9 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb4Q6P8W9 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC17.1■□□□□ 0.33
Hmgb4Q6P8W9 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb4Q6P8W9 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hmgb4Q6P8W9 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC17.1■□□□□ 0.33
Hmgb4Q6P8W9 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Hmgb4Q6P8W9 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Hmgb4Q6P8W9 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Hmgb4Q6P8W9 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Hmgb4Q6P8W9 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Hmgb4Q6P8W9 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Hmgb4Q6P8W9 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Hmgb4Q6P8W9 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
Hmgb4Q6P8W9 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Hmgb4Q6P8W9 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Hmgb4Q6P8W9 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Hmgb4Q6P8W9 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Hmgb4Q6P8W9 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Hmgb4Q6P8W9 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Hmgb4Q6P8W9 Gm28659-201ENSMUST00000188013 759 ntBASIC17.09■□□□□ 0.33
Hmgb4Q6P8W9 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Hmgb4Q6P8W9 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC17.09■□□□□ 0.33
Hmgb4Q6P8W9 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Hmgb4Q6P8W9 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Hmgb4Q6P8W9 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC17.09■□□□□ 0.33
Hmgb4Q6P8W9 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC17.09■□□□□ 0.33
Hmgb4Q6P8W9 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Hmgb4Q6P8W9 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms