Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC21.2■□□□□ 0.98
Trim28Q62318 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim28Q62318 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC21.2■□□□□ 0.98
Trim28Q62318 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim28Q62318 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Trim28Q62318 Gm6089-201ENSMUST00000197666 938 ntBASIC21.2■□□□□ 0.98
Trim28Q62318 Gm6443-201ENSMUST00000203599 874 ntBASIC21.2■□□□□ 0.98
Trim28Q62318 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC21.2■□□□□ 0.98
Trim28Q62318 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC21.2■□□□□ 0.98
Trim28Q62318 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC21.2■□□□□ 0.98
Trim28Q62318 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim28Q62318 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim28Q62318 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Trim28Q62318 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Trim28Q62318 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim28Q62318 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim28Q62318 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Trim28Q62318 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC21.19■□□□□ 0.98
Trim28Q62318 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC21.19■□□□□ 0.98
Trim28Q62318 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Trim28Q62318 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC21.19■□□□□ 0.98
Trim28Q62318 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
Trim28Q62318 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
Trim28Q62318 Gm15743-202ENSMUST00000182690 1901 ntBASIC21.19■□□□□ 0.98
Trim28Q62318 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim28Q62318 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Trim28Q62318 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Trim28Q62318 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim28Q62318 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim28Q62318 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim28Q62318 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
Trim28Q62318 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim28Q62318 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim28Q62318 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Trim28Q62318 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC21.18■□□□□ 0.98
Trim28Q62318 Gm43514-201ENSMUST00000198852 424 ntBASIC21.18■□□□□ 0.98
Trim28Q62318 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim28Q62318 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
Trim28Q62318 Gm19439-201ENSMUST00000198195 2273 ntBASIC21.18■□□□□ 0.98
Trim28Q62318 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim28Q62318 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim28Q62318 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim28Q62318 Gm26596-201ENSMUST00000180464 2655 ntBASIC21.17■□□□□ 0.98
Trim28Q62318 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Trim28Q62318 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC21.17■□□□□ 0.98
Trim28Q62318 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim28Q62318 Mir5126-201ENSMUST00000175513 77 ntBASIC21.17■□□□□ 0.98
Trim28Q62318 Gm27525-201ENSMUST00000184465 107 ntBASIC21.17■□□□□ 0.98
Trim28Q62318 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Trim28Q62318 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim28Q62318 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim28Q62318 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC21.17■□□□□ 0.98
Trim28Q62318 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim28Q62318 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim28Q62318 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim28Q62318 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim28Q62318 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim28Q62318 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim28Q62318 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim28Q62318 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim28Q62318 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Trim28Q62318 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Trim28Q62318 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim28Q62318 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Trim28Q62318 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Trim28Q62318 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Trim28Q62318 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC21.16■□□□□ 0.98
Trim28Q62318 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim28Q62318 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim28Q62318 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Trim28Q62318 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim28Q62318 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC21.16■□□□□ 0.98
Trim28Q62318 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim28Q62318 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim28Q62318 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC21.15■□□□□ 0.98
Trim28Q62318 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Trim28Q62318 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim28Q62318 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim28Q62318 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC21.15■□□□□ 0.98
Trim28Q62318 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC21.15■□□□□ 0.98
Trim28Q62318 Gm18622-201ENSMUST00000219361 595 ntBASIC21.15■□□□□ 0.98
Trim28Q62318 AC138767.1-201ENSMUST00000222661 415 ntBASIC21.15■□□□□ 0.98
Trim28Q62318 AC159106.1-201ENSMUST00000224421 690 ntBASIC21.15■□□□□ 0.98
Trim28Q62318 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim28Q62318 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Trim28Q62318 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim28Q62318 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Trim28Q62318 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim28Q62318 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC21.15■□□□□ 0.98
Trim28Q62318 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Trim28Q62318 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim28Q62318 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim28Q62318 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Trim28Q62318 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Trim28Q62318 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Trim28Q62318 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Trim28Q62318 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Trim28Q62318 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Trim28Q62318 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
Trim28Q62318 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms