Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC17.9■□□□□ 0.46
Cln3Q61124 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Cln3Q61124 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Cln3Q61124 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Cln3Q61124 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Cln3Q61124 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC17.9■□□□□ 0.46
Cln3Q61124 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC17.9■□□□□ 0.46
Cln3Q61124 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Cln3Q61124 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Cln3Q61124 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC17.9■□□□□ 0.46
Cln3Q61124 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Cln3Q61124 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Cln3Q61124 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Cln3Q61124 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Cln3Q61124 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Cln3Q61124 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Cln3Q61124 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
Cln3Q61124 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC17.89■□□□□ 0.45
Cln3Q61124 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Cln3Q61124 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Cln3Q61124 Gm23935-201ENSMUST00000102303 57 ntBASIC17.89■□□□□ 0.45
Cln3Q61124 Gm24270-201ENSMUST00000102326 57 ntBASIC17.89■□□□□ 0.45
Cln3Q61124 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Cln3Q61124 Gm7222-201ENSMUST00000117512 906 ntBASIC17.89■□□□□ 0.45
Cln3Q61124 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC17.89■□□□□ 0.45
Cln3Q61124 Gm24245-201ENSMUST00000157318 57 ntBASIC17.89■□□□□ 0.45
Cln3Q61124 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC17.89■□□□□ 0.45
Cln3Q61124 Mir6404-201ENSMUST00000183699 94 ntBASIC17.89■□□□□ 0.45
Cln3Q61124 AC090659.1-201ENSMUST00000224334 768 ntBASIC17.89■□□□□ 0.45
Cln3Q61124 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Cln3Q61124 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Cln3Q61124 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
Cln3Q61124 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Cln3Q61124 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Cln3Q61124 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Cln3Q61124 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Cln3Q61124 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Cln3Q61124 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Cln3Q61124 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Cln3Q61124 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cln3Q61124 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cln3Q61124 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cln3Q61124 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Cln3Q61124 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cln3Q61124 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cln3Q61124 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cln3Q61124 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cln3Q61124 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC17.88■□□□□ 0.45
Cln3Q61124 Gm6736-201ENSMUST00000166583 948 ntBASIC17.88■□□□□ 0.45
Cln3Q61124 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC17.88■□□□□ 0.45
Cln3Q61124 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC17.88■□□□□ 0.45
Cln3Q61124 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cln3Q61124 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC17.88■□□□□ 0.45
Cln3Q61124 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Cln3Q61124 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cln3Q61124 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Cln3Q61124 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
Cln3Q61124 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Cln3Q61124 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cln3Q61124 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cln3Q61124 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cln3Q61124 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cln3Q61124 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cln3Q61124 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC17.87■□□□□ 0.45
Cln3Q61124 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cln3Q61124 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cln3Q61124 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Cln3Q61124 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC17.87■□□□□ 0.45
Cln3Q61124 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC17.87■□□□□ 0.45
Cln3Q61124 AC084391.1-201ENSMUST00000200651 141 ntBASIC17.87■□□□□ 0.45
Cln3Q61124 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC17.87■□□□□ 0.45
Cln3Q61124 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cln3Q61124 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Cln3Q61124 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Cln3Q61124 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Cln3Q61124 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cln3Q61124 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cln3Q61124 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cln3Q61124 Gm37811-201ENSMUST00000192416 2601 ntBASIC17.86■□□□□ 0.45
Cln3Q61124 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
Cln3Q61124 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cln3Q61124 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cln3Q61124 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cln3Q61124 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
Cln3Q61124 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC17.86■□□□□ 0.45
Cln3Q61124 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cln3Q61124 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC17.86■□□□□ 0.45
Cln3Q61124 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cln3Q61124 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cln3Q61124 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cln3Q61124 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cln3Q61124 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cln3Q61124 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cln3Q61124 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cln3Q61124 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cln3Q61124 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cln3Q61124 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cln3Q61124 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Cln3Q61124 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Cln3Q61124 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms