Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Vps54Q5SPW0 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
Vps54Q5SPW0 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Vps54Q5SPW0 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Vps54Q5SPW0 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Vps54Q5SPW0 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Vps54Q5SPW0 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC19.64■□□□□ 0.73
Vps54Q5SPW0 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Vps54Q5SPW0 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Vps54Q5SPW0 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Vps54Q5SPW0 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Vps54Q5SPW0 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Vps54Q5SPW0 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Vps54Q5SPW0 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC19.63■□□□□ 0.73
Vps54Q5SPW0 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Vps54Q5SPW0 Gm13312-201ENSMUST00000119631 718 ntBASIC19.63■□□□□ 0.73
Vps54Q5SPW0 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Vps54Q5SPW0 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Vps54Q5SPW0 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
Vps54Q5SPW0 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Vps54Q5SPW0 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Vps54Q5SPW0 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Vps54Q5SPW0 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Vps54Q5SPW0 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Vps54Q5SPW0 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC19.62■□□□□ 0.73
Vps54Q5SPW0 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Vps54Q5SPW0 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC19.62■□□□□ 0.73
Vps54Q5SPW0 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
Vps54Q5SPW0 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Vps54Q5SPW0 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC19.62■□□□□ 0.73
Vps54Q5SPW0 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Vps54Q5SPW0 Gm45244-201ENSMUST00000211328 2200 ntBASIC19.62■□□□□ 0.73
Vps54Q5SPW0 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
Vps54Q5SPW0 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Vps54Q5SPW0 Gm17971-201ENSMUST00000190239 806 ntBASIC19.62■□□□□ 0.73
Vps54Q5SPW0 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
Vps54Q5SPW0 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Vps54Q5SPW0 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Vps54Q5SPW0 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Vps54Q5SPW0 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Vps54Q5SPW0 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Vps54Q5SPW0 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Vps54Q5SPW0 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Vps54Q5SPW0 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Vps54Q5SPW0 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Vps54Q5SPW0 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC19.61■□□□□ 0.73
Vps54Q5SPW0 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Vps54Q5SPW0 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Vps54Q5SPW0 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Vps54Q5SPW0 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Vps54Q5SPW0 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Vps54Q5SPW0 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Vps54Q5SPW0 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Vps54Q5SPW0 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Vps54Q5SPW0 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Vps54Q5SPW0 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Vps54Q5SPW0 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Vps54Q5SPW0 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Vps54Q5SPW0 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Vps54Q5SPW0 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Vps54Q5SPW0 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Vps54Q5SPW0 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Vps54Q5SPW0 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Vps54Q5SPW0 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC19.6■□□□□ 0.73
Vps54Q5SPW0 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Vps54Q5SPW0 Gm14464-201ENSMUST00000119658 1254 ntBASIC19.6■□□□□ 0.73
Vps54Q5SPW0 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Vps54Q5SPW0 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC19.6■□□□□ 0.73
Vps54Q5SPW0 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Vps54Q5SPW0 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Vps54Q5SPW0 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
Vps54Q5SPW0 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC19.6■□□□□ 0.73
Vps54Q5SPW0 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Vps54Q5SPW0 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Vps54Q5SPW0 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Vps54Q5SPW0 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Vps54Q5SPW0 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
Vps54Q5SPW0 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC19.59■□□□□ 0.73
Vps54Q5SPW0 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Vps54Q5SPW0 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Vps54Q5SPW0 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Vps54Q5SPW0 Gm12895-201ENSMUST00000122214 226 ntBASIC19.59■□□□□ 0.73
Vps54Q5SPW0 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC19.59■□□□□ 0.73
Vps54Q5SPW0 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Vps54Q5SPW0 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC19.59■□□□□ 0.73
Vps54Q5SPW0 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
Vps54Q5SPW0 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Vps54Q5SPW0 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC19.59■□□□□ 0.73
Vps54Q5SPW0 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Vps54Q5SPW0 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Vps54Q5SPW0 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
Vps54Q5SPW0 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Vps54Q5SPW0 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Vps54Q5SPW0 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC19.59■□□□□ 0.73
Vps54Q5SPW0 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
Vps54Q5SPW0 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Vps54Q5SPW0 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
Vps54Q5SPW0 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Vps54Q5SPW0 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Vps54Q5SPW0 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms