Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Iqck-206ENSMUST00000208658 2891 ntBASIC15.74■□□□□ 0.11
Col27a1Q5QNQ9 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
Col27a1Q5QNQ9 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col27a1Q5QNQ9 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col27a1Q5QNQ9 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col27a1Q5QNQ9 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC15.74■□□□□ 0.11
Col27a1Q5QNQ9 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC15.74■□□□□ 0.11
Col27a1Q5QNQ9 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col27a1Q5QNQ9 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col27a1Q5QNQ9 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col27a1Q5QNQ9 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
Col27a1Q5QNQ9 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col27a1Q5QNQ9 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col27a1Q5QNQ9 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Col27a1Q5QNQ9 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
Col27a1Q5QNQ9 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col27a1Q5QNQ9 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col27a1Q5QNQ9 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Col27a1Q5QNQ9 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col27a1Q5QNQ9 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC15.74■□□□□ 0.11
Col27a1Q5QNQ9 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm22065-201ENSMUST00000103753 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm22066-201ENSMUST00000103761 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm24932-201ENSMUST00000103763 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm24115-201ENSMUST00000103799 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm22190-201ENSMUST00000103827 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm22191-201ENSMUST00000103831 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm24721-201ENSMUST00000103849 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm28018-201ENSMUST00000103869 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm26399-201ENSMUST00000103937 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm25349-201ENSMUST00000177728 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm23616-201ENSMUST00000177797 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm25871-201ENSMUST00000177816 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm24752-201ENSMUST00000178240 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm24496-201ENSMUST00000178287 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm25649-201ENSMUST00000178476 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm25548-201ENSMUST00000178681 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm23147-201ENSMUST00000178841 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm26095-201ENSMUST00000179270 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm22171-201ENSMUST00000179283 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm23936-201ENSMUST00000179354 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm22619-201ENSMUST00000179516 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm25255-201ENSMUST00000179579 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm24755-201ENSMUST00000179691 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm26506-201ENSMUST00000179692 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm25086-201ENSMUST00000179931 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm23243-201ENSMUST00000180047 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm24659-201ENSMUST00000180212 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm24169-201ENSMUST00000180244 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm23689-201ENSMUST00000180354 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm27359-201ENSMUST00000184153 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm27785-201ENSMUST00000184268 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm27466-201ENSMUST00000184396 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Gm27703-201ENSMUST00000184836 110 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
Col27a1Q5QNQ9 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col27a1Q5QNQ9 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col27a1Q5QNQ9 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col27a1Q5QNQ9 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col27a1Q5QNQ9 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col27a1Q5QNQ9 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC15.72■□□□□ 0.11
Col27a1Q5QNQ9 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC15.72■□□□□ 0.11
Col27a1Q5QNQ9 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Col27a1Q5QNQ9 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col27a1Q5QNQ9 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Col27a1Q5QNQ9 Mir6977-201ENSMUST00000184960 64 ntBASIC15.72■□□□□ 0.11
Col27a1Q5QNQ9 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Col27a1Q5QNQ9 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
Col27a1Q5QNQ9 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Col27a1Q5QNQ9 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Col27a1Q5QNQ9 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col27a1Q5QNQ9 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC15.72■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms