Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gm25911-201ENSMUST00000157621 56 ntBASIC13.95□□□□□ -0.18
Col8a1Q00780 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col8a1Q00780 Gm9727-201ENSMUST00000161387 555 ntBASIC13.95□□□□□ -0.18
Col8a1Q00780 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC13.95□□□□□ -0.18
Col8a1Q00780 Gm7230-201ENSMUST00000173026 815 ntBASIC13.95□□□□□ -0.18
Col8a1Q00780 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC13.95□□□□□ -0.18
Col8a1Q00780 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col8a1Q00780 Gm18421-201ENSMUST00000204122 625 ntBASIC13.95□□□□□ -0.18
Col8a1Q00780 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col8a1Q00780 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col8a1Q00780 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Col8a1Q00780 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col8a1Q00780 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC13.95□□□□□ -0.18
Col8a1Q00780 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col8a1Q00780 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Col8a1Q00780 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col8a1Q00780 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col8a1Q00780 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col8a1Q00780 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col8a1Q00780 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col8a1Q00780 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col8a1Q00780 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Col8a1Q00780 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC13.95□□□□□ -0.18
Col8a1Q00780 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Col8a1Q00780 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
Col8a1Q00780 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col8a1Q00780 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC13.94□□□□□ -0.18
Col8a1Q00780 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col8a1Q00780 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Col8a1Q00780 Gm43213-201ENSMUST00000151866 1790 ntBASIC13.94□□□□□ -0.18
Col8a1Q00780 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col8a1Q00780 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col8a1Q00780 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col8a1Q00780 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col8a1Q00780 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Col8a1Q00780 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col8a1Q00780 Gm44450-201ENSMUST00000199528 114 ntBASIC13.94□□□□□ -0.18
Col8a1Q00780 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC13.94□□□□□ -0.18
Col8a1Q00780 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Col8a1Q00780 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col8a1Q00780 Rbfox2-207ENSMUST00000227533 1041 ntBASIC13.94□□□□□ -0.18
Col8a1Q00780 AC158982.1-201ENSMUST00000228377 901 ntBASIC13.94□□□□□ -0.18
Col8a1Q00780 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col8a1Q00780 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col8a1Q00780 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col8a1Q00780 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col8a1Q00780 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col8a1Q00780 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Col8a1Q00780 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col8a1Q00780 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Col8a1Q00780 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col8a1Q00780 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col8a1Q00780 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Col8a1Q00780 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC13.93□□□□□ -0.18
Col8a1Q00780 Gm43272-201ENSMUST00000200599 1584 ntBASIC13.93□□□□□ -0.18
Col8a1Q00780 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col8a1Q00780 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
Col8a1Q00780 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC13.93□□□□□ -0.18
Col8a1Q00780 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Col8a1Q00780 Gm25745-201ENSMUST00000174945 133 ntBASIC13.93□□□□□ -0.18
Col8a1Q00780 Gm7506-201ENSMUST00000207758 815 ntBASIC13.93□□□□□ -0.18
Col8a1Q00780 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col8a1Q00780 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col8a1Q00780 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col8a1Q00780 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Col8a1Q00780 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
Col8a1Q00780 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC13.93□□□□□ -0.18
Col8a1Q00780 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
Col8a1Q00780 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col8a1Q00780 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col8a1Q00780 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Col8a1Q00780 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col8a1Q00780 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC13.92□□□□□ -0.18
Col8a1Q00780 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC13.92□□□□□ -0.18
Col8a1Q00780 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col8a1Q00780 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
Col8a1Q00780 Gm8784-201ENSMUST00000222096 1435 ntBASIC13.92□□□□□ -0.18
Col8a1Q00780 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col8a1Q00780 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col8a1Q00780 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col8a1Q00780 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Col8a1Q00780 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
Col8a1Q00780 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col8a1Q00780 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
Col8a1Q00780 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Col8a1Q00780 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC13.92□□□□□ -0.18
Col8a1Q00780 Gm27628-201ENSMUST00000184911 107 ntBASIC13.92□□□□□ -0.18
Col8a1Q00780 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC13.92□□□□□ -0.18
Col8a1Q00780 Gm29707-201ENSMUST00000196325 491 ntBASIC13.92□□□□□ -0.18
Col8a1Q00780 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col8a1Q00780 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col8a1Q00780 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Col8a1Q00780 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Col8a1Q00780 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Col8a1Q00780 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col8a1Q00780 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col8a1Q00780 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col8a1Q00780 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Col8a1Q00780 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Col8a1Q00780 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms