Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Nkx3-1P97436 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC14.13□□□□□ -0.15
Nkx3-1P97436 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Nkx3-1P97436 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Nkx3-1P97436 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Nkx3-1P97436 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Nkx3-1P97436 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
Nkx3-1P97436 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Nkx3-1P97436 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Nkx3-1P97436 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Nkx3-1P97436 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
Nkx3-1P97436 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Nkx3-1P97436 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Nkx3-1P97436 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Nkx3-1P97436 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Nkx3-1P97436 Gm18856-201ENSMUST00000178096 1374 ntBASIC14.12□□□□□ -0.15
Nkx3-1P97436 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Nkx3-1P97436 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Nkx3-1P97436 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Nkx3-1P97436 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC14.12□□□□□ -0.15
Nkx3-1P97436 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC14.12□□□□□ -0.15
Nkx3-1P97436 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Nkx3-1P97436 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC14.12□□□□□ -0.15
Nkx3-1P97436 Gm44357-201ENSMUST00000195897 142 ntBASIC14.12□□□□□ -0.15
Nkx3-1P97436 Gm19658-201ENSMUST00000196231 138 ntBASIC14.12□□□□□ -0.15
Nkx3-1P97436 Gm44367-201ENSMUST00000196836 138 ntBASIC14.12□□□□□ -0.15
Nkx3-1P97436 Gm44350-201ENSMUST00000197197 138 ntBASIC14.12□□□□□ -0.15
Nkx3-1P97436 Gm44390-201ENSMUST00000197533 144 ntBASIC14.12□□□□□ -0.15
Nkx3-1P97436 Gm44313-201ENSMUST00000198018 138 ntBASIC14.12□□□□□ -0.15
Nkx3-1P97436 Gm44486-201ENSMUST00000198508 138 ntBASIC14.12□□□□□ -0.15
Nkx3-1P97436 Gm44314-201ENSMUST00000199263 138 ntBASIC14.12□□□□□ -0.15
Nkx3-1P97436 Gm44394-201ENSMUST00000199558 138 ntBASIC14.12□□□□□ -0.15
Nkx3-1P97436 Gm44484-201ENSMUST00000199873 138 ntBASIC14.12□□□□□ -0.15
Nkx3-1P97436 Gm44466-201ENSMUST00000200264 138 ntBASIC14.12□□□□□ -0.15
Nkx3-1P97436 Gm44359-201ENSMUST00000200671 138 ntBASIC14.12□□□□□ -0.15
Nkx3-1P97436 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC14.12□□□□□ -0.15
Nkx3-1P97436 AC138767.1-201ENSMUST00000222661 415 ntBASIC14.12□□□□□ -0.15
Nkx3-1P97436 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Nkx3-1P97436 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Nkx3-1P97436 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Nkx3-1P97436 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Nkx3-1P97436 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC14.12□□□□□ -0.15
Nkx3-1P97436 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Nkx3-1P97436 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC14.12□□□□□ -0.15
Nkx3-1P97436 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Nkx3-1P97436 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC14.12□□□□□ -0.15
Nkx3-1P97436 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Nkx3-1P97436 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Nkx3-1P97436 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Nkx3-1P97436 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC14.11□□□□□ -0.15
Nkx3-1P97436 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
Nkx3-1P97436 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC14.11□□□□□ -0.15
Nkx3-1P97436 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Nkx3-1P97436 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Nkx3-1P97436 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Nkx3-1P97436 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC14.11□□□□□ -0.15
Nkx3-1P97436 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Nkx3-1P97436 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Nkx3-1P97436 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Nkx3-1P97436 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Nkx3-1P97436 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Nkx3-1P97436 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC14.11□□□□□ -0.15
Nkx3-1P97436 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Nkx3-1P97436 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
Nkx3-1P97436 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Nkx3-1P97436 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Nkx3-1P97436 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Nkx3-1P97436 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Nkx3-1P97436 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Nkx3-1P97436 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Nkx3-1P97436 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Nkx3-1P97436 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Nkx3-1P97436 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Nkx3-1P97436 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Nkx3-1P97436 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
Nkx3-1P97436 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC14.1□□□□□ -0.15
Nkx3-1P97436 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Nkx3-1P97436 Mir5131-201ENSMUST00000175426 93 ntBASIC14.1□□□□□ -0.15
Nkx3-1P97436 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Nkx3-1P97436 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Nkx3-1P97436 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC14.1□□□□□ -0.15
Nkx3-1P97436 Gm27525-201ENSMUST00000184465 107 ntBASIC14.1□□□□□ -0.15
Nkx3-1P97436 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Nkx3-1P97436 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Nkx3-1P97436 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Nkx3-1P97436 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Nkx3-1P97436 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Nkx3-1P97436 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Nkx3-1P97436 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Nkx3-1P97436 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Nkx3-1P97436 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Nkx3-1P97436 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Nkx3-1P97436 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Nkx3-1P97436 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC14.1□□□□□ -0.15
Nkx3-1P97436 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Nkx3-1P97436 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Nkx3-1P97436 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Nkx3-1P97436 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Nkx3-1P97436 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Nkx3-1P97436 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 11 ms