Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Shmt1P50431 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Shmt1P50431 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
Shmt1P50431 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Shmt1P50431 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Shmt1P50431 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
Shmt1P50431 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Shmt1P50431 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Shmt1P50431 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Shmt1P50431 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC17.28■□□□□ 0.36
Shmt1P50431 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Shmt1P50431 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Shmt1P50431 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Shmt1P50431 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Shmt1P50431 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Shmt1P50431 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Shmt1P50431 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Shmt1P50431 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Shmt1P50431 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Shmt1P50431 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC17.28■□□□□ 0.36
Shmt1P50431 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC17.28■□□□□ 0.36
Shmt1P50431 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC17.28■□□□□ 0.36
Shmt1P50431 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Shmt1P50431 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Shmt1P50431 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC17.28■□□□□ 0.36
Shmt1P50431 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Shmt1P50431 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC17.28■□□□□ 0.36
Shmt1P50431 Umpk-ps-201ENSMUST00000211897 827 ntBASIC17.28■□□□□ 0.36
Shmt1P50431 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC17.28■□□□□ 0.36
Shmt1P50431 CT009713.7-201ENSMUST00000224689 571 ntBASIC17.28■□□□□ 0.36
Shmt1P50431 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Shmt1P50431 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Shmt1P50431 Gm7461-201ENSMUST00000058918 827 ntBASIC17.28■□□□□ 0.36
Shmt1P50431 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
Shmt1P50431 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Shmt1P50431 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Shmt1P50431 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Shmt1P50431 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Shmt1P50431 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Shmt1P50431 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Shmt1P50431 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Shmt1P50431 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Shmt1P50431 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Shmt1P50431 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Shmt1P50431 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Shmt1P50431 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Shmt1P50431 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Shmt1P50431 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Shmt1P50431 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Shmt1P50431 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
Shmt1P50431 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Shmt1P50431 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Shmt1P50431 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
Shmt1P50431 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Shmt1P50431 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Shmt1P50431 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Shmt1P50431 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
Shmt1P50431 Gm7153-201ENSMUST00000117092 455 ntBASIC17.27■□□□□ 0.36
Shmt1P50431 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Shmt1P50431 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Shmt1P50431 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Shmt1P50431 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Shmt1P50431 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC17.27■□□□□ 0.36
Shmt1P50431 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Shmt1P50431 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Shmt1P50431 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
Shmt1P50431 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Shmt1P50431 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Shmt1P50431 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Shmt1P50431 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Shmt1P50431 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Shmt1P50431 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Shmt1P50431 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Shmt1P50431 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Shmt1P50431 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Shmt1P50431 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Shmt1P50431 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
Shmt1P50431 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Shmt1P50431 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Shmt1P50431 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Shmt1P50431 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
Shmt1P50431 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC17.26■□□□□ 0.35
Shmt1P50431 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
Shmt1P50431 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Shmt1P50431 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Shmt1P50431 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Shmt1P50431 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Shmt1P50431 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Shmt1P50431 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Shmt1P50431 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Shmt1P50431 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Shmt1P50431 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Shmt1P50431 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Shmt1P50431 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Shmt1P50431 Gm13312-201ENSMUST00000119631 718 ntBASIC17.25■□□□□ 0.35
Shmt1P50431 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Shmt1P50431 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Shmt1P50431 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC17.25■□□□□ 0.35
Shmt1P50431 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Shmt1P50431 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 16.1 ms