Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Rfx1P48377 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Rfx1P48377 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Rfx1P48377 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Rfx1P48377 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Rfx1P48377 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Rfx1P48377 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Rfx1P48377 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Rfx1P48377 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Rfx1P48377 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Rfx1P48377 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Rfx1P48377 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC19.61■□□□□ 0.73
Rfx1P48377 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Rfx1P48377 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Rfx1P48377 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Rfx1P48377 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Rfx1P48377 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Rfx1P48377 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Rfx1P48377 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Rfx1P48377 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Rfx1P48377 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Rfx1P48377 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Rfx1P48377 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Rfx1P48377 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Rfx1P48377 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Rfx1P48377 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Rfx1P48377 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
Rfx1P48377 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Rfx1P48377 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC19.6■□□□□ 0.73
Rfx1P48377 Trmt13-210ENSMUST00000198454 880 ntBASIC19.6■□□□□ 0.73
Rfx1P48377 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Rfx1P48377 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Rfx1P48377 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Rfx1P48377 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Rfx1P48377 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Rfx1P48377 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Rfx1P48377 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Rfx1P48377 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Rfx1P48377 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Rfx1P48377 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Rfx1P48377 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Rfx1P48377 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC19.59■□□□□ 0.73
Rfx1P48377 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC19.59■□□□□ 0.73
Rfx1P48377 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
Rfx1P48377 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Rfx1P48377 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Rfx1P48377 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Rfx1P48377 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Rfx1P48377 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Rfx1P48377 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Rfx1P48377 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC19.59■□□□□ 0.73
Rfx1P48377 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
Rfx1P48377 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC19.59■□□□□ 0.73
Rfx1P48377 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC19.59■□□□□ 0.73
Rfx1P48377 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Rfx1P48377 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Rfx1P48377 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
Rfx1P48377 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Rfx1P48377 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Rfx1P48377 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Rfx1P48377 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Rfx1P48377 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Rfx1P48377 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Rfx1P48377 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Rfx1P48377 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Rfx1P48377 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Rfx1P48377 Gm12527-201ENSMUST00000117967 564 ntBASIC19.58■□□□□ 0.72
Rfx1P48377 Gm12441-201ENSMUST00000121806 588 ntBASIC19.58■□□□□ 0.72
Rfx1P48377 AC120002.2-201ENSMUST00000220205 773 ntBASIC19.58■□□□□ 0.72
Rfx1P48377 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Rfx1P48377 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Rfx1P48377 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Rfx1P48377 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Rfx1P48377 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC19.57■□□□□ 0.72
Rfx1P48377 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Rfx1P48377 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Rfx1P48377 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Rfx1P48377 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Rfx1P48377 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC19.57■□□□□ 0.72
Rfx1P48377 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Rfx1P48377 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Rfx1P48377 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Rfx1P48377 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC19.57■□□□□ 0.72
Rfx1P48377 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC19.57■□□□□ 0.72
Rfx1P48377 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Rfx1P48377 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Rfx1P48377 Gm10698-201ENSMUST00000182663 604 ntBASIC19.57■□□□□ 0.72
Rfx1P48377 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC19.57■□□□□ 0.72
Rfx1P48377 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Rfx1P48377 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
Rfx1P48377 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Rfx1P48377 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Rfx1P48377 Gm7712-202ENSMUST00000222331 1510 ntBASIC19.56■□□□□ 0.72
Rfx1P48377 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Rfx1P48377 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Rfx1P48377 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
Rfx1P48377 Gm18958-201ENSMUST00000174258 762 ntBASIC19.56■□□□□ 0.72
Rfx1P48377 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC19.56■□□□□ 0.72
Rfx1P48377 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Rfx1P48377 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms