Protein–RNA interactions for Protein: P29595

Nedd8, NEDD8, mousemouse

Predictions only

Length 81 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nedd8P29595 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Nedd8P29595 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
Nedd8P29595 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Nedd8P29595 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nedd8P29595 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nedd8P29595 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Nedd8P29595 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Nedd8P29595 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nedd8P29595 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nedd8P29595 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nedd8P29595 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nedd8P29595 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nedd8P29595 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nedd8P29595 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nedd8P29595 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nedd8P29595 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nedd8P29595 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nedd8P29595 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
Nedd8P29595 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nedd8P29595 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nedd8P29595 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nedd8P29595 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Nedd8P29595 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nedd8P29595 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nedd8P29595 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Nedd8P29595 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nedd8P29595 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC15.22■□□□□ 0.03
Nedd8P29595 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
Nedd8P29595 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC15.22■□□□□ 0.03
Nedd8P29595 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC15.22■□□□□ 0.03
Nedd8P29595 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC15.22■□□□□ 0.03
Nedd8P29595 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nedd8P29595 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nedd8P29595 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC15.22■□□□□ 0.03
Nedd8P29595 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nedd8P29595 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nedd8P29595 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nedd8P29595 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nedd8P29595 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nedd8P29595 App-207ENSMUST00000227737 2827 ntBASIC15.21■□□□□ 0.03
Nedd8P29595 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC15.21■□□□□ 0.03
Nedd8P29595 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Nedd8P29595 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Nedd8P29595 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nedd8P29595 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nedd8P29595 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nedd8P29595 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nedd8P29595 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Nedd8P29595 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Nedd8P29595 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nedd8P29595 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Nedd8P29595 Zfp783-201ENSMUST00000095946 670 ntBASIC15.21■□□□□ 0.03
Nedd8P29595 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Nedd8P29595 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC15.21■□□□□ 0.03
Nedd8P29595 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Nedd8P29595 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nedd8P29595 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nedd8P29595 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nedd8P29595 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
Nedd8P29595 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Nedd8P29595 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC15.21■□□□□ 0.02
Nedd8P29595 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC15.21■□□□□ 0.02
Nedd8P29595 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
Nedd8P29595 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Nedd8P29595 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nedd8P29595 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC15.2■□□□□ 0.02
Nedd8P29595 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nedd8P29595 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Nedd8P29595 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Nedd8P29595 Zfp651-201ENSMUST00000093772 6353 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Nedd8P29595 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nedd8P29595 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Nedd8P29595 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC15.2■□□□□ 0.02
Nedd8P29595 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nedd8P29595 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Nedd8P29595 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC15.2■□□□□ 0.02
Nedd8P29595 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
Nedd8P29595 Gm21956-201ENSMUST00000179946 522 ntBASIC15.2■□□□□ 0.02
Nedd8P29595 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Nedd8P29595 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
Nedd8P29595 Gm42778-201ENSMUST00000199644 553 ntBASIC15.2■□□□□ 0.02
Nedd8P29595 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nedd8P29595 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC15.2■□□□□ 0.02
Nedd8P29595 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nedd8P29595 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC15.2■□□□□ 0.02
Nedd8P29595 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nedd8P29595 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
Nedd8P29595 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC15.2■□□□□ 0.02
Nedd8P29595 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC15.2■□□□□ 0.02
Nedd8P29595 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Nedd8P29595 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Nedd8P29595 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Nedd8P29595 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nedd8P29595 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nedd8P29595 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Nedd8P29595 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nedd8P29595 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nedd8P29595 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nedd8P29595 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nedd8P29595 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms