Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
Hoxd3P09027 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Hoxd3P09027 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Hoxd3P09027 4930412F09Rik-201ENSMUST00000139006 1017 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Hoxd3P09027 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC12.73□□□□□ -0.37
Hoxd3P09027 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC12.73□□□□□ -0.37
Hoxd3P09027 Gm17971-201ENSMUST00000190239 806 ntBASIC12.73□□□□□ -0.37
Hoxd3P09027 Olfr793-ps1-201ENSMUST00000205161 895 ntBASIC12.73□□□□□ -0.37
Hoxd3P09027 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC12.73□□□□□ -0.37
Hoxd3P09027 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Hoxd3P09027 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Hoxd3P09027 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Hoxd3P09027 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Hoxd3P09027 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Hoxd3P09027 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Hoxd3P09027 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Hoxd3P09027 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Hoxd3P09027 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Hoxd3P09027 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC12.72□□□□□ -0.37
Hoxd3P09027 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Hoxd3P09027 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Hoxd3P09027 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Hoxd3P09027 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Hoxd3P09027 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Hoxd3P09027 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Hoxd3P09027 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Hoxd3P09027 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Hoxd3P09027 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Hoxd3P09027 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Hoxd3P09027 Gm43338-201ENSMUST00000198617 2223 ntBASIC12.72□□□□□ -0.37
Hoxd3P09027 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC12.72□□□□□ -0.37
Hoxd3P09027 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Hoxd3P09027 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC12.72□□□□□ -0.37
Hoxd3P09027 Gm13546-201ENSMUST00000135735 401 ntTSL 5 BASIC12.72□□□□□ -0.37
Hoxd3P09027 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC12.72□□□□□ -0.37
Hoxd3P09027 Gm21156-201ENSMUST00000189693 869 ntBASIC12.72□□□□□ -0.37
Hoxd3P09027 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC12.72□□□□□ -0.37
Hoxd3P09027 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
Hoxd3P09027 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Hoxd3P09027 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC12.72□□□□□ -0.37
Hoxd3P09027 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Hoxd3P09027 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Hoxd3P09027 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC12.72□□□□□ -0.37
Hoxd3P09027 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC12.72□□□□□ -0.37
Hoxd3P09027 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Hoxd3P09027 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Hoxd3P09027 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Hoxd3P09027 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Hoxd3P09027 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Hoxd3P09027 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Hoxd3P09027 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC12.71□□□□□ -0.37
Hoxd3P09027 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Hoxd3P09027 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Hoxd3P09027 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC12.71□□□□□ -0.37
Hoxd3P09027 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Hoxd3P09027 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Hoxd3P09027 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Hoxd3P09027 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC12.71□□□□□ -0.37
Hoxd3P09027 Gm11361-201ENSMUST00000223428 607 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
Hoxd3P09027 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Hoxd3P09027 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Hoxd3P09027 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Hoxd3P09027 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC12.71□□□□□ -0.37
Hoxd3P09027 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Hoxd3P09027 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Hoxd3P09027 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
Hoxd3P09027 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Hoxd3P09027 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Hoxd3P09027 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Hoxd3P09027 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Hoxd3P09027 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hoxd3P09027 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hoxd3P09027 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hoxd3P09027 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hoxd3P09027 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hoxd3P09027 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Hoxd3P09027 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hoxd3P09027 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC12.7□□□□□ -0.38
Hoxd3P09027 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hoxd3P09027 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hoxd3P09027 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC12.7□□□□□ -0.38
Hoxd3P09027 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hoxd3P09027 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC12.7□□□□□ -0.38
Hoxd3P09027 Gm10052-201ENSMUST00000168019 960 ntBASIC12.7□□□□□ -0.38
Hoxd3P09027 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
Hoxd3P09027 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC12.7□□□□□ -0.38
Hoxd3P09027 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC12.7□□□□□ -0.38
Hoxd3P09027 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC12.7□□□□□ -0.38
Hoxd3P09027 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hoxd3P09027 Gm7729-201ENSMUST00000050143 801 ntBASIC12.7□□□□□ -0.38
Hoxd3P09027 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
Hoxd3P09027 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC12.7□□□□□ -0.38
Hoxd3P09027 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hoxd3P09027 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Hoxd3P09027 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Hoxd3P09027 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC12.7□□□□□ -0.38
Hoxd3P09027 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Hoxd3P09027 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Hoxd3P09027 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
Hoxd3P09027 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 21.8 ms