Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cops4O88544 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cops4O88544 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC15.16■□□□□ 0.02
Cops4O88544 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cops4O88544 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cops4O88544 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cops4O88544 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cops4O88544 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Cops4O88544 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cops4O88544 Gm42545-201ENSMUST00000202755 922 ntBASIC15.16■□□□□ 0.02
Cops4O88544 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Cops4O88544 AC166341.7-201ENSMUST00000221698 126 ntBASIC15.16■□□□□ 0.02
Cops4O88544 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Cops4O88544 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cops4O88544 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cops4O88544 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cops4O88544 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cops4O88544 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cops4O88544 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cops4O88544 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC15.16■□□□□ 0.02
Cops4O88544 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cops4O88544 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cops4O88544 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cops4O88544 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
Cops4O88544 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cops4O88544 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cops4O88544 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC15.15■□□□□ 0.02
Cops4O88544 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cops4O88544 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Cops4O88544 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC15.15■□□□□ 0.02
Cops4O88544 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Cops4O88544 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cops4O88544 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Cops4O88544 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Cops4O88544 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Cops4O88544 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
Cops4O88544 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cops4O88544 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Cops4O88544 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC15.15■□□□□ 0.02
Cops4O88544 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cops4O88544 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Cops4O88544 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cops4O88544 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Cops4O88544 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC15.15■□□□□ 0.02
Cops4O88544 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Cops4O88544 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cops4O88544 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
Cops4O88544 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cops4O88544 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cops4O88544 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC15.14■□□□□ 0.01
Cops4O88544 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cops4O88544 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cops4O88544 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cops4O88544 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC15.14■□□□□ 0.01
Cops4O88544 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cops4O88544 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC15.14■□□□□ 0.01
Cops4O88544 Gm12382-201ENSMUST00000122005 922 ntBASIC15.14■□□□□ 0.01
Cops4O88544 Trmt13-210ENSMUST00000198454 880 ntBASIC15.14■□□□□ 0.01
Cops4O88544 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC15.14■□□□□ 0.01
Cops4O88544 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cops4O88544 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cops4O88544 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cops4O88544 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cops4O88544 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cops4O88544 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cops4O88544 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cops4O88544 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cops4O88544 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
Cops4O88544 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cops4O88544 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cops4O88544 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC15.14■□□□□ 0.01
Cops4O88544 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cops4O88544 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cops4O88544 CT010444.2-201ENSMUST00000217877 1629 ntBASIC15.14■□□□□ 0.01
Cops4O88544 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cops4O88544 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cops4O88544 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC15.13■□□□□ 0.01
Cops4O88544 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.01
Cops4O88544 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cops4O88544 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cops4O88544 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Cops4O88544 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Cops4O88544 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cops4O88544 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cops4O88544 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Cops4O88544 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cops4O88544 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Cops4O88544 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC15.13■□□□□ 0.01
Cops4O88544 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC15.13■□□□□ 0.01
Cops4O88544 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC15.13■□□□□ 0.01
Cops4O88544 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC15.13■□□□□ 0.01
Cops4O88544 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cops4O88544 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Cops4O88544 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC15.13■□□□□ 0.01
Cops4O88544 Gm37812-201ENSMUST00000195216 2475 ntBASIC15.13■□□□□ 0.01
Cops4O88544 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC15.13■□□□□ 0.01
Cops4O88544 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.01
Cops4O88544 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Cops4O88544 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cops4O88544 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms