Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb3O54879 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Hmgb3O54879 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb3O54879 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb3O54879 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb3O54879 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb3O54879 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb3O54879 AC093043.3-201ENSMUST00000226531 2273 ntBASIC13.62□□□□□ -0.23
Hmgb3O54879 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb3O54879 Zfp651-201ENSMUST00000093772 6353 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Hmgb3O54879 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb3O54879 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb3O54879 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb3O54879 Naa15-205ENSMUST00000193266 7480 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb3O54879 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb3O54879 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb3O54879 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb3O54879 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb3O54879 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC13.62□□□□□ -0.23
Hmgb3O54879 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Hmgb3O54879 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb3O54879 Rai1-202ENSMUST00000090806 7217 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb3O54879 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb3O54879 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC13.62□□□□□ -0.23
Hmgb3O54879 Sybu-209ENSMUST00000228639 4113 ntBASIC13.62□□□□□ -0.23
Hmgb3O54879 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb3O54879 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC13.62□□□□□ -0.23
Hmgb3O54879 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb3O54879 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Hmgb3O54879 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hmgb3O54879 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hmgb3O54879 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hmgb3O54879 Plxnb2-201ENSMUST00000060808 6394 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Hmgb3O54879 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hmgb3O54879 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hmgb3O54879 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hmgb3O54879 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hmgb3O54879 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hmgb3O54879 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hmgb3O54879 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hmgb3O54879 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC13.61□□□□□ -0.23
Hmgb3O54879 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hmgb3O54879 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Hmgb3O54879 Gm29241-201ENSMUST00000189260 1096 ntBASIC13.61□□□□□ -0.23
Hmgb3O54879 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC13.61□□□□□ -0.23
Hmgb3O54879 Wnt10b-205ENSMUST00000226846 1204 ntBASIC13.61□□□□□ -0.23
Hmgb3O54879 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hmgb3O54879 Mtag2-201ENSMUST00000058665 714 ntBASIC13.61□□□□□ -0.23
Hmgb3O54879 Gm10493-201ENSMUST00000097270 612 ntBASIC13.61□□□□□ -0.23
Hmgb3O54879 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC13.61□□□□□ -0.23
Hmgb3O54879 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hmgb3O54879 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Hmgb3O54879 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hmgb3O54879 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC13.61□□□□□ -0.23
Hmgb3O54879 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hmgb3O54879 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hmgb3O54879 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC13.61□□□□□ -0.23
Hmgb3O54879 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC13.61□□□□□ -0.23
Hmgb3O54879 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hmgb3O54879 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Hmgb3O54879 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Hmgb3O54879 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Hmgb3O54879 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Hmgb3O54879 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Hmgb3O54879 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Hmgb3O54879 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Hmgb3O54879 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Hmgb3O54879 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC13.6□□□□□ -0.23
Hmgb3O54879 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Hmgb3O54879 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Hmgb3O54879 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Hmgb3O54879 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Hmgb3O54879 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
Hmgb3O54879 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Hmgb3O54879 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Hmgb3O54879 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Hmgb3O54879 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Hmgb3O54879 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Hmgb3O54879 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC13.6□□□□□ -0.23
Hmgb3O54879 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Hmgb3O54879 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Hmgb3O54879 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC13.6□□□□□ -0.23
Hmgb3O54879 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Hmgb3O54879 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Hmgb3O54879 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Hmgb3O54879 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Hmgb3O54879 Flg-201ENSMUST00000050758 1488 ntBASIC13.6□□□□□ -0.23
Hmgb3O54879 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Hmgb3O54879 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Hmgb3O54879 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Hmgb3O54879 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hmgb3O54879 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Hmgb3O54879 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hmgb3O54879 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Hmgb3O54879 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC13.59□□□□□ -0.23
Hmgb3O54879 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hmgb3O54879 Fn1-211ENSMUST00000187938 7965 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hmgb3O54879 AC133083.1-201ENSMUST00000221736 2209 ntBASIC13.59□□□□□ -0.23
Hmgb3O54879 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
Hmgb3O54879 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 12.9 ms