Protein–RNA interactions for Protein: A0A0B4J1K1

Trav4-3, T cell receptor alpha variable 4-3 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav4-3A0A0B4J1K1 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.62
Trav4-3A0A0B4J1K1 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Trav4-3A0A0B4J1K1 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Trav4-3A0A0B4J1K1 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.62
Trav4-3A0A0B4J1K1 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC11.21□□□□□ -0.62
Trav4-3A0A0B4J1K1 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.62
Trav4-3A0A0B4J1K1 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Trav4-3A0A0B4J1K1 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
Trav4-3A0A0B4J1K1 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
Trav4-3A0A0B4J1K1 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Trav4-3A0A0B4J1K1 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Gm27528-202ENSMUST00000222916 2012 ntBASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC11.2□□□□□ -0.62
Trav4-3A0A0B4J1K1 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Trav4-3A0A0B4J1K1 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC11.18□□□□□ -0.62
Trav4-3A0A0B4J1K1 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Trav4-3A0A0B4J1K1 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Trav4-3A0A0B4J1K1 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Trav4-3A0A0B4J1K1 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Trav4-3A0A0B4J1K1 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Trav4-3A0A0B4J1K1 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Trav4-3A0A0B4J1K1 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC11.18□□□□□ -0.62
Trav4-3A0A0B4J1K1 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC11.18□□□□□ -0.62
Trav4-3A0A0B4J1K1 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Trav4-3A0A0B4J1K1 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC11.18□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms