Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 RNU6-1066P-201ENST00000363573 105 ntBASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 SLC9B1P2-201ENST00000398120 1184 ntBASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 AL024474.1-201ENST00000404655 591 ntBASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 AC096533.1-201ENST00000411645 353 ntBASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 AC245052.5-201ENST00000416320 649 ntBASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 PTGES3P1-201ENST00000439531 483 ntBASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 MTCO1P48-201ENST00000448024 1096 ntBASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 AC093663.1-201ENST00000497190 394 ntBASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 SAP18P1-201ENST00000512058 390 ntBASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 AC007458.1-201ENST00000542812 373 ntBASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 AL121603.1-201ENST00000553815 142 ntBASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 AC087481.2-201ENST00000565492 330 ntBASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 AL109653.1-201ENST00000603091 248 ntBASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 AC128687.1-201ENST00000605304 619 ntBASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 SNORA51-201ENST00000606420 132 ntBASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 AC092954.1-201ENST00000609121 445 ntBASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 AC092650.2-201ENST00000619984 902 ntBASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 AP003476.1-201ENST00000623984 516 ntBASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.84
CCDC40Q4G0X9 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.59□□□□□ -1.84
CCDC40Q4G0X9 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.59□□□□□ -1.84
CCDC40Q4G0X9 RNU6-657P-201ENST00000383904 107 ntBASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 MIR200C-201ENST00000384980 68 ntBASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 PTMAP2-201ENST00000397627 327 ntBASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 C1DP1-201ENST00000426049 402 ntBASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 HIGD1AP11-201ENST00000438361 280 ntBASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 AC092393.1-201ENST00000439625 742 ntBASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 ATP5C1P1-201ENST00000441945 895 ntBASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 AC104308.1-201ENST00000454621 333 ntBASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 RPS20P24-201ENST00000457473 361 ntBASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 AC008427.1-201ENST00000503102 655 ntBASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 AC069306.1-201ENST00000507006 843 ntBASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 AC090502.2-201ENST00000549267 280 ntBASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 MTCYBP27-201ENST00000555160 670 ntBASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 AC090079.2-201ENST00000575289 768 ntBASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 MIR1254-2-201ENST00000579553 63 ntBASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 AL445435.1-201ENST00000604232 665 ntBASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 AL355365.1-201ENST00000616480 294 ntBASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 AL157770.1-201ENST00000623049 439 ntBASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 AC091903.1-201ENST00000624322 454 ntBASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 AC080188.3-201ENST00000624842 748 ntBASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 AC073476.4-201ENST00000628409 72 ntBASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 NUP58P1-201ENST00000502546 1738 ntBASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.58□□□□□ -1.84
CCDC40Q4G0X9 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 RNU6-707P-201ENST00000364647 95 ntBASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 RNU6-1300P-201ENST00000391046 108 ntBASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 U3.29-201ENST00000391296 212 ntBASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 AC016769.3-201ENST00000396562 315 ntBASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 RNU4-65P-201ENST00000410473 140 ntBASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 NDUFB4P5-201ENST00000415445 361 ntBASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 RPS7P15-201ENST00000415804 584 ntBASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 OR1AA1P-201ENST00000419597 916 ntBASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 USP9YP21-201ENST00000420603 432 ntBASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 PTP4A1P7-201ENST00000423476 514 ntBASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms