Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC096533.1-201ENST00000411645 353 ntBASIC3.38□□□□□ -1.87
VPS35Q96QK1 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS35Q96QK1 MTCO3P1-205ENST00000422088 832 ntBASIC3.38□□□□□ -1.87
VPS35Q96QK1 PTP4A1P7-201ENST00000423476 514 ntBASIC3.38□□□□□ -1.87
VPS35Q96QK1 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS35Q96QK1 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS35Q96QK1 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC3.38□□□□□ -1.87
VPS35Q96QK1 RAC1P8-201ENST00000427086 527 ntBASIC3.38□□□□□ -1.87
VPS35Q96QK1 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS35Q96QK1 PTGES3P1-201ENST00000439531 483 ntBASIC3.38□□□□□ -1.87
VPS35Q96QK1 PRDX3P3-201ENST00000447765 522 ntBASIC3.38□□□□□ -1.87
VPS35Q96QK1 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS35Q96QK1 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS35Q96QK1 AC006539.3-201ENST00000454258 129 ntBASIC3.38□□□□□ -1.87
VPS35Q96QK1 snoU13.24-201ENST00000458998 104 ntBASIC3.38□□□□□ -1.87
VPS35Q96QK1 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VPS35Q96QK1 AC093663.1-201ENST00000497190 394 ntBASIC3.38□□□□□ -1.87
VPS35Q96QK1 AC008427.1-201ENST00000503102 655 ntBASIC3.38□□□□□ -1.87
VPS35Q96QK1 AC112198.1-201ENST00000505369 1220 ntBASIC3.38□□□□□ -1.87
VPS35Q96QK1 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VPS35Q96QK1 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.38□□□□□ -1.87
VPS35Q96QK1 AP000619.3-201ENST00000535634 1127 ntBASIC3.38□□□□□ -1.87
VPS35Q96QK1 MTCYBP27-201ENST00000555160 670 ntBASIC3.38□□□□□ -1.87
VPS35Q96QK1 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS35Q96QK1 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS35Q96QK1 AC012182.1-201ENST00000570133 895 ntBASIC3.38□□□□□ -1.87
VPS35Q96QK1 AC053481.3-201ENST00000577881 843 ntBASIC3.38□□□□□ -1.87
VPS35Q96QK1 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS35Q96QK1 AC128687.1-201ENST00000605304 619 ntBASIC3.38□□□□□ -1.87
VPS35Q96QK1 MIR92B-201ENST00000607575 96 ntBASIC3.38□□□□□ -1.87
VPS35Q96QK1 AC006023.2-201ENST00000609916 167 ntBASIC3.38□□□□□ -1.87
VPS35Q96QK1 AL592148.2-201ENST00000612210 372 ntBASIC3.38□□□□□ -1.87
VPS35Q96QK1 AC008083.4-201ENST00000615076 444 ntBASIC3.38□□□□□ -1.87
VPS35Q96QK1 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS35Q96QK1 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC3.38□□□□□ -1.87
VPS35Q96QK1 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
VPS35Q96QK1 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.38□□□□□ -1.87
VPS35Q96QK1 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.38□□□□□ -1.87
VPS35Q96QK1 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.38□□□□□ -1.87
VPS35Q96QK1 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC3.38□□□□□ -1.87
VPS35Q96QK1 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
VPS35Q96QK1 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
VPS35Q96QK1 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
VPS35Q96QK1 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
VPS35Q96QK1 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.37□□□□□ -1.87
VPS35Q96QK1 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.37□□□□□ -1.87
VPS35Q96QK1 RNU6-492P-201ENST00000363035 104 ntBASIC3.37□□□□□ -1.87
VPS35Q96QK1 RNU6-1066P-201ENST00000363573 105 ntBASIC3.37□□□□□ -1.87
VPS35Q96QK1 RNU6-657P-201ENST00000383904 107 ntBASIC3.37□□□□□ -1.87
VPS35Q96QK1 SLC9B1P2-201ENST00000398120 1184 ntBASIC3.37□□□□□ -1.87
VPS35Q96QK1 RNU2-71P-201ENST00000411395 189 ntBASIC3.37□□□□□ -1.87
VPS35Q96QK1 RPS3AP25-201ENST00000411660 793 ntBASIC3.37□□□□□ -1.87
VPS35Q96QK1 RAD23BP2-201ENST00000416003 1207 ntBASIC3.37□□□□□ -1.87
VPS35Q96QK1 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC3.37□□□□□ -1.87
VPS35Q96QK1 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS35Q96QK1 C1DP1-201ENST00000426049 402 ntBASIC3.37□□□□□ -1.87
VPS35Q96QK1 YME1L1P1-201ENST00000429435 297 ntBASIC3.37□□□□□ -1.87
VPS35Q96QK1 TRBV26OR9-2-201ENST00000432077 293 ntBASIC3.37□□□□□ -1.87
VPS35Q96QK1 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC3.37□□□□□ -1.87
VPS35Q96QK1 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS35Q96QK1 HMGB1P12-201ENST00000438594 598 ntBASIC3.37□□□□□ -1.87
VPS35Q96QK1 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.37□□□□□ -1.87
VPS35Q96QK1 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.37□□□□□ -1.87
VPS35Q96QK1 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
VPS35Q96QK1 RPL26P28-201ENST00000451325 435 ntBASIC3.37□□□□□ -1.87
VPS35Q96QK1 CYCSP35-201ENST00000451978 304 ntBASIC3.37□□□□□ -1.87
VPS35Q96QK1 AC097262.1-201ENST00000452559 548 ntBASIC3.37□□□□□ -1.87
VPS35Q96QK1 HMGN2P16-201ENST00000456802 261 ntBASIC3.37□□□□□ -1.87
VPS35Q96QK1 PLGLA-201ENST00000465668 449 ntBASIC3.37□□□□□ -1.87
VPS35Q96QK1 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC3.37□□□□□ -1.87
VPS35Q96QK1 PCBP2P3-201ENST00000509726 843 ntBASIC3.37□□□□□ -1.87
VPS35Q96QK1 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
VPS35Q96QK1 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS35Q96QK1 NDUFS5P6-201ENST00000529136 295 ntBASIC3.37□□□□□ -1.87
VPS35Q96QK1 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS35Q96QK1 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.37□□□□□ -1.87
VPS35Q96QK1 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.37□□□□□ -1.87
VPS35Q96QK1 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS35Q96QK1 AC090079.2-201ENST00000575289 768 ntBASIC3.37□□□□□ -1.87
VPS35Q96QK1 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS35Q96QK1 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS35Q96QK1 XIAPP1-201ENST00000603162 600 ntBASIC3.37□□□□□ -1.87
VPS35Q96QK1 AC090425.2-201ENST00000608818 501 ntBASIC3.37□□□□□ -1.87
VPS35Q96QK1 AC092954.1-201ENST00000609121 445 ntBASIC3.37□□□□□ -1.87
VPS35Q96QK1 MIR7975-201ENST00000619350 68 ntBASIC3.37□□□□□ -1.87
VPS35Q96QK1 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC3.37□□□□□ -1.87
VPS35Q96QK1 AC040168.1-201ENST00000623594 991 ntBASIC3.37□□□□□ -1.87
VPS35Q96QK1 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.37□□□□□ -1.87
VPS35Q96QK1 AC127502.3-201ENST00000636170 1206 ntBASIC3.37□□□□□ -1.87
VPS35Q96QK1 AC017071.1-201ENST00000564407 2204 ntBASIC3.37□□□□□ -1.87
VPS35Q96QK1 MTCO1P12-201ENST00000414273 1543 ntBASIC3.37□□□□□ -1.87
VPS35Q96QK1 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.37□□□□□ -1.87
VPS35Q96QK1 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
VPS35Q96QK1 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
VPS35Q96QK1 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.36□□□□□ -1.87
VPS35Q96QK1 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
VPS35Q96QK1 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
VPS35Q96QK1 ANKRD36P1-201ENST00000344424 659 ntBASIC3.36□□□□□ -1.87
VPS35Q96QK1 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
VPS35Q96QK1 RNU6-707P-201ENST00000364647 95 ntBASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 118 ms