Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
FOXA1P55317 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.62□□□□□ -1.99
FOXA1P55317 RNU6-252P-201ENST00000363232 107 ntBASIC2.62□□□□□ -1.99
FOXA1P55317 RNU1-112P-201ENST00000364401 164 ntBASIC2.62□□□□□ -1.99
FOXA1P55317 MIR153-1-201ENST00000384914 90 ntBASIC2.62□□□□□ -1.99
FOXA1P55317 UBA52P6-201ENST00000399822 382 ntBASIC2.62□□□□□ -1.99
FOXA1P55317 HNRNPDP2-201ENST00000406475 478 ntBASIC2.62□□□□□ -1.99
FOXA1P55317 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC2.62□□□□□ -1.99
FOXA1P55317 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC2.62□□□□□ -1.99
FOXA1P55317 SAR1AP4-201ENST00000429225 591 ntBASIC2.62□□□□□ -1.99
FOXA1P55317 AC023347.2-201ENST00000433994 462 ntBASIC2.62□□□□□ -1.99
FOXA1P55317 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
FOXA1P55317 RPL36AP6-201ENST00000435770 321 ntBASIC2.62□□□□□ -1.99
FOXA1P55317 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC2.62□□□□□ -1.99
FOXA1P55317 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.62□□□□□ -1.99
FOXA1P55317 AC007000.2-201ENST00000442564 487 ntBASIC2.62□□□□□ -1.99
FOXA1P55317 RPS27P5-201ENST00000444247 244 ntBASIC2.62□□□□□ -1.99
FOXA1P55317 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC2.62□□□□□ -1.99
FOXA1P55317 CACYBPP2-201ENST00000453625 678 ntBASIC2.62□□□□□ -1.99
FOXA1P55317 AC096992.1-201ENST00000459808 709 ntBASIC2.62□□□□□ -1.99
FOXA1P55317 RPL21P8-201ENST00000465083 535 ntBASIC2.62□□□□□ -1.99
FOXA1P55317 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC2.62□□□□□ -1.99
FOXA1P55317 RN7SL499P-201ENST00000481141 276 ntBASIC2.62□□□□□ -1.99
FOXA1P55317 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC2.62□□□□□ -1.99
FOXA1P55317 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC2.62□□□□□ -1.99
FOXA1P55317 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC2.62□□□□□ -1.99
FOXA1P55317 HIGD1AP13-201ENST00000509878 289 ntBASIC2.62□□□□□ -1.99
FOXA1P55317 LEF1-218ENST00000512172 598 ntTSL 2 BASIC2.62□□□□□ -1.99
FOXA1P55317 AC103833.1-201ENST00000517442 172 ntBASIC2.62□□□□□ -1.99
FOXA1P55317 OR5AK3P-201ENST00000527486 1297 ntBASIC2.62□□□□□ -1.99
FOXA1P55317 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC2.62□□□□□ -1.99
FOXA1P55317 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC2.62□□□□□ -1.99
FOXA1P55317 AC079600.2-201ENST00000550076 130 ntBASIC2.62□□□□□ -1.99
FOXA1P55317 AC007954.1-201ENST00000554198 494 ntBASIC2.62□□□□□ -1.99
FOXA1P55317 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.62□□□□□ -1.99
FOXA1P55317 AC090751.1-201ENST00000566966 267 ntBASIC2.62□□□□□ -1.99
FOXA1P55317 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC2.62□□□□□ -1.99
FOXA1P55317 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC2.62□□□□□ -1.99
FOXA1P55317 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.62□□□□□ -1.99
FOXA1P55317 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC2.62□□□□□ -1.99
FOXA1P55317 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
FOXA1P55317 RNA5SP108-201ENST00000605921 117 ntBASIC2.62□□□□□ -1.99
FOXA1P55317 AC012467.1-201ENST00000607740 256 ntBASIC2.62□□□□□ -1.99
FOXA1P55317 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC2.62□□□□□ -1.99
FOXA1P55317 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
FOXA1P55317 AC003001.2-201ENST00000616294 831 ntBASIC2.62□□□□□ -1.99
FOXA1P55317 AL118508.4-201ENST00000624142 1176 ntBASIC2.62□□□□□ -1.99
FOXA1P55317 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
FOXA1P55317 AC022031.1-201ENST00000585985 2593 ntBASIC2.62□□□□□ -1.99
FOXA1P55317 ZNF833P-201ENST00000424938 1494 ntBASIC2.62□□□□□ -1.99
FOXA1P55317 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.62□□□□□ -1.99
FOXA1P55317 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.61□□□□□ -1.99
FOXA1P55317 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
FOXA1P55317 AL049737.1-201ENST00000413920 1403 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
FOXA1P55317 OR5H2-201ENST00000355273 945 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 Y_RNA.111-201ENST00000363248 100 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 MIR128-1-201ENST00000384921 82 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 EIF4EBP2P3-201ENST00000403144 334 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 RPL5P18-201ENST00000406671 891 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 RPL31P2-201ENST00000413849 377 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 MTND2P16-201ENST00000419987 799 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 AC023128.2-201ENST00000420880 1223 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 AL513175.2-201ENST00000422071 443 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 RPL7P46-201ENST00000425129 740 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC2.61□□□□□ -1.99
FOXA1P55317 MORF4L1P7-201ENST00000426038 703 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 AL513321.1-201ENST00000441175 761 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 ST13P20-201ENST00000447996 1065 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 RPL23AP23-201ENST00000452590 471 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 RPL23AP31-201ENST00000456160 467 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 ARPC3P2-201ENST00000457786 533 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC2.61□□□□□ -1.99
FOXA1P55317 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC2.61□□□□□ -1.99
FOXA1P55317 AC078918.1-201ENST00000498515 228 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC2.61□□□□□ -1.99
FOXA1P55317 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC2.61□□□□□ -1.99
FOXA1P55317 AC090071.1-201ENST00000507713 644 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 AC111000.2-201ENST00000507775 550 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 AC117522.3-201ENST00000507974 584 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 TMEM248P1-201ENST00000510579 951 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 MAL2-205ENST00000521048 575 ntTSL 4 BASIC2.61□□□□□ -1.99
FOXA1P55317 COX6B1P6-201ENST00000522347 255 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC2.61□□□□□ -1.99
FOXA1P55317 OR8L1P-201ENST00000534005 955 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC2.61□□□□□ -1.99
FOXA1P55317 AC233266.2-201ENST00000567067 528 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 MTCO3P13-201ENST00000577757 781 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC2.61□□□□□ -1.99
FOXA1P55317 AC078899.3-201ENST00000599065 212 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 AC040174.2-201ENST00000602701 465 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 AC079610.2-201ENST00000604818 690 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 AC113194.1-201ENST00000606037 500 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC2.61□□□□□ -1.99
FOXA1P55317 AL162274.2-201ENST00000614406 332 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC2.61□□□□□ -1.99
FOXA1P55317 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC2.61□□□□□ -1.99
FOXA1P55317 U6.107-201ENST00000637108 79 ntBASIC2.61□□□□□ -1.99
FOXA1P55317 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
FOXA1P55317 MAPK6PS3-201ENST00000403865 2162 ntBASIC2.61□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms