Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.42□□□□□ -1.86
VPS35Q96QK1 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC3.42□□□□□ -1.86
VPS35Q96QK1 AL389915.1-201ENST00000422463 466 ntBASIC3.42□□□□□ -1.86
VPS35Q96QK1 AC006548.1-201ENST00000427470 102 ntBASIC3.42□□□□□ -1.86
VPS35Q96QK1 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC3.42□□□□□ -1.86
VPS35Q96QK1 CYCSP43-201ENST00000438233 310 ntBASIC3.42□□□□□ -1.86
VPS35Q96QK1 COX6CP18-201ENST00000448769 222 ntBASIC3.42□□□□□ -1.86
VPS35Q96QK1 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC3.42□□□□□ -1.86
VPS35Q96QK1 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
VPS35Q96QK1 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.42□□□□□ -1.86
VPS35Q96QK1 PABPC1P3-201ENST00000469174 459 ntBASIC3.42□□□□□ -1.86
VPS35Q96QK1 VN1R17P-201ENST00000472048 1090 ntBASIC3.42□□□□□ -1.86
VPS35Q96QK1 AC010301.1-201ENST00000473936 355 ntBASIC3.42□□□□□ -1.86
VPS35Q96QK1 AP000563.1-201ENST00000490865 758 ntBASIC3.42□□□□□ -1.86
VPS35Q96QK1 AC092185.1-201ENST00000491371 97 ntBASIC3.42□□□□□ -1.86
VPS35Q96QK1 DYNLL1P6-201ENST00000503440 264 ntBASIC3.42□□□□□ -1.86
VPS35Q96QK1 AC084024.2-201ENST00000503480 791 ntBASIC3.42□□□□□ -1.86
VPS35Q96QK1 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC3.42□□□□□ -1.86
VPS35Q96QK1 AC008837.1-201ENST00000511513 412 ntBASIC3.42□□□□□ -1.86
VPS35Q96QK1 ARL2BPP6-201ENST00000512757 439 ntBASIC3.42□□□□□ -1.86
VPS35Q96QK1 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC3.42□□□□□ -1.86
VPS35Q96QK1 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.42□□□□□ -1.86
VPS35Q96QK1 AC104417.1-201ENST00000523974 751 ntBASIC3.42□□□□□ -1.86
VPS35Q96QK1 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC3.42□□□□□ -1.86
VPS35Q96QK1 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC3.42□□□□□ -1.86
VPS35Q96QK1 AP001317.1-201ENST00000531194 960 ntBASIC3.42□□□□□ -1.86
VPS35Q96QK1 AL139174.1-201ENST00000531489 886 ntBASIC3.42□□□□□ -1.86
VPS35Q96QK1 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.42□□□□□ -1.86
VPS35Q96QK1 SULT1C2P1-202ENST00000562418 459 ntBASIC3.42□□□□□ -1.86
VPS35Q96QK1 AL355812.1-201ENST00000603215 216 ntBASIC3.42□□□□□ -1.86
VPS35Q96QK1 CR381572.1-201ENST00000625098 102 ntBASIC3.42□□□□□ -1.86
VPS35Q96QK1 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC3.42□□□□□ -1.86
VPS35Q96QK1 AC032011.1-201ENST00000611703 1549 ntBASIC3.42□□□□□ -1.86
VPS35Q96QK1 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
VPS35Q96QK1 OFD1P5Y-201ENST00000447585 2590 ntBASIC3.42□□□□□ -1.86
VPS35Q96QK1 SUCLA2P2-201ENST00000417269 1309 ntBASIC3.42□□□□□ -1.86
VPS35Q96QK1 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.42□□□□□ -1.86
VPS35Q96QK1 MTND5P27-201ENST00000428871 1720 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.41□□□□□ -1.86
VPS35Q96QK1 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
VPS35Q96QK1 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
VPS35Q96QK1 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
VPS35Q96QK1 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
VPS35Q96QK1 RNA5SP258-201ENST00000362750 119 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 RNA5SP50-201ENST00000363731 107 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 MIR23B-201ENST00000384832 97 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 MIR183-201ENST00000384958 110 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 AL136116.1-201ENST00000403591 381 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC3.41□□□□□ -1.86
VPS35Q96QK1 BOLA3P4-201ENST00000418151 400 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 AC092634.6-201ENST00000418558 192 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 BX842559.1-201ENST00000419615 532 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 HSFY1P1-201ENST00000423928 1178 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 RPL21P66-201ENST00000426566 466 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 Z93242.1-201ENST00000427102 353 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 OFD1P12Y-201ENST00000427963 1207 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 BLOC1S2P1-201ENST00000428431 301 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC3.41□□□□□ -1.86
VPS35Q96QK1 OFD1P13Y-201ENST00000431179 1232 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 AL159987.2-201ENST00000432754 307 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 VDAC1P3-201ENST00000434069 851 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 AC241584.1-201ENST00000438469 1241 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 AC127537.2-201ENST00000439258 465 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 RPL6P9-201ENST00000466502 859 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 AC010285.1-201ENST00000470580 392 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 AC025518.1-201ENST00000479856 347 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 FCF1P8-201ENST00000510322 597 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 SNORA70.19-201ENST00000516717 90 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 SNORA31.20-201ENST00000517111 133 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 NDUFB9P3-201ENST00000521269 501 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 AC109635.4-202ENST00000531666 412 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC3.41□□□□□ -1.86
VPS35Q96QK1 AC007458.1-201ENST00000542812 373 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC3.41□□□□□ -1.86
VPS35Q96QK1 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.41□□□□□ -1.86
VPS35Q96QK1 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC3.41□□□□□ -1.86
VPS35Q96QK1 AC103881.1-201ENST00000603476 538 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 AP002802.2-201ENST00000605877 235 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 AL583856.2-201ENST00000606298 543 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 AC124016.2-201ENST00000610058 665 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 AL590282.1-201ENST00000610379 1136 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 AC019176.2-201ENST00000611579 315 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 AL355365.1-201ENST00000616480 294 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 AC253576.2-201ENST00000618815 580 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.41□□□□□ -1.86
VPS35Q96QK1 AP003476.1-201ENST00000623984 516 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 AC006963.1-201ENST00000624003 1052 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 MTND2P41-201ENST00000637599 773 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
VPS35Q96QK1 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
VPS35Q96QK1 AC118273.1-201ENST00000525324 3006 ntBASIC3.41□□□□□ -1.86
VPS35Q96QK1 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.4□□□□□ -1.86
VPS35Q96QK1 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.4□□□□□ -1.86
VPS35Q96QK1 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
VPS35Q96QK1 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
VPS35Q96QK1 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.4□□□□□ -1.86
VPS35Q96QK1 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
VPS35Q96QK1 AL645937.1-201ENST00000641739 1652 ntBASIC3.4□□□□□ -1.86
VPS35Q96QK1 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms