Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC3.89□□□□□ -1.79
CUX1P39880 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC3.89□□□□□ -1.79
CUX1P39880 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
CUX1P39880 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
CUX1P39880 OR4G2P-202ENST00000641004 1759 ntBASIC3.89□□□□□ -1.79
CUX1P39880 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.88□□□□□ -1.79
CUX1P39880 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
CUX1P39880 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
CUX1P39880 SNORA41-201ENST00000384675 132 ntBASIC3.88□□□□□ -1.79
CUX1P39880 EXTL2P1-201ENST00000446218 416 ntBASIC3.88□□□□□ -1.79
CUX1P39880 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.88□□□□□ -1.79
CUX1P39880 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC3.88□□□□□ -1.79
CUX1P39880 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC3.88□□□□□ -1.79
CUX1P39880 OR10AB1P-202ENST00000641219 1686 ntBASIC3.88□□□□□ -1.79
CUX1P39880 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
CUX1P39880 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
CUX1P39880 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.87□□□□□ -1.79
CUX1P39880 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
CUX1P39880 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
CUX1P39880 PTP4A1P7-201ENST00000423476 514 ntBASIC3.87□□□□□ -1.79
CUX1P39880 IPMKP1-201ENST00000425988 855 ntBASIC3.87□□□□□ -1.79
CUX1P39880 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.87□□□□□ -1.79
CUX1P39880 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC3.87□□□□□ -1.79
CUX1P39880 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.87□□□□□ -1.79
CUX1P39880 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC3.87□□□□□ -1.79
CUX1P39880 ZNF355P-201ENST00000427301 3216 ntBASIC3.87□□□□□ -1.79
CUX1P39880 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.87□□□□□ -1.79
CUX1P39880 Y_RNA.164-201ENST00000363709 102 ntBASIC3.86□□□□□ -1.79
CUX1P39880 GSTA12P-201ENST00000402398 508 ntBASIC3.86□□□□□ -1.79
CUX1P39880 UQCRFS1P3-201ENST00000407697 385 ntBASIC3.86□□□□□ -1.79
CUX1P39880 RN7SKP32-201ENST00000410167 303 ntBASIC3.86□□□□□ -1.79
CUX1P39880 RANP7-201ENST00000418085 644 ntBASIC3.86□□□□□ -1.79
CUX1P39880 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.86□□□□□ -1.79
CUX1P39880 AL159169.1-201ENST00000421119 127 ntBASIC3.86□□□□□ -1.79
CUX1P39880 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC3.86□□□□□ -1.79
CUX1P39880 AF186190.1-201ENST00000517470 480 ntBASIC3.86□□□□□ -1.79
CUX1P39880 OR5BN1P-201ENST00000532955 829 ntBASIC3.86□□□□□ -1.79
CUX1P39880 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC3.86□□□□□ -1.79
CUX1P39880 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC3.86□□□□□ -1.79
CUX1P39880 AC025281.1-201ENST00000567026 265 ntBASIC3.86□□□□□ -1.79
CUX1P39880 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC3.86□□□□□ -1.79
CUX1P39880 AC103710.3-201ENST00000608157 948 ntBASIC3.86□□□□□ -1.79
CUX1P39880 MIR6766-201ENST00000622641 72 ntBASIC3.86□□□□□ -1.79
CUX1P39880 MIR6873-201ENST00000622788 63 ntBASIC3.86□□□□□ -1.79
CUX1P39880 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CUX1P39880 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
CUX1P39880 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CUX1P39880 SNORA51.4-201ENST00000364993 124 ntBASIC3.85□□□□□ -1.79
CUX1P39880 U8.13-201ENST00000390842 128 ntBASIC3.85□□□□□ -1.79
CUX1P39880 CASP3-203ENST00000393588 677 ntTSL 4 BASIC3.85□□□□□ -1.79
CUX1P39880 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CUX1P39880 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC3.85□□□□□ -1.79
CUX1P39880 SETP10-201ENST00000424368 814 ntBASIC3.85□□□□□ -1.79
CUX1P39880 AC092427.1-202ENST00000430569 476 ntBASIC3.85□□□□□ -1.79
CUX1P39880 RPL9P33-201ENST00000484311 566 ntBASIC3.85□□□□□ -1.79
CUX1P39880 RN7SL283P-201ENST00000489055 303 ntBASIC3.85□□□□□ -1.79
CUX1P39880 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.85□□□□□ -1.79
CUX1P39880 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC3.85□□□□□ -1.79
CUX1P39880 MTCYBP20-201ENST00000524239 1129 ntBASIC3.85□□□□□ -1.79
CUX1P39880 AC069234.5-201ENST00000611056 416 ntBASIC3.85□□□□□ -1.79
CUX1P39880 MIR6845-201ENST00000613182 61 ntBASIC3.85□□□□□ -1.79
CUX1P39880 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC3.85□□□□□ -1.79
CUX1P39880 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
CUX1P39880 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CUX1P39880 RNU2-2P-201ENST00000410396 191 ntBASIC3.85□□□□□ -1.79
CUX1P39880 CACYBPP1-201ENST00000438592 684 ntBASIC3.85□□□□□ -1.79
CUX1P39880 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC3.85□□□□□ -1.79
CUX1P39880 AC091544.1-201ENST00000484702 348 ntBASIC3.85□□□□□ -1.79
CUX1P39880 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC3.85□□□□□ -1.79
CUX1P39880 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC3.85□□□□□ -1.79
CUX1P39880 AC107222.1-201ENST00000510899 637 ntBASIC3.85□□□□□ -1.79
CUX1P39880 U2.15-201ENST00000611544 191 ntBASIC3.85□□□□□ -1.79
CUX1P39880 U2.16-201ENST00000613119 191 ntBASIC3.85□□□□□ -1.79
CUX1P39880 U2.12-201ENST00000613778 191 ntBASIC3.85□□□□□ -1.79
CUX1P39880 U2.20-201ENST00000613956 192 ntBASIC3.85□□□□□ -1.79
CUX1P39880 U2.9-201ENST00000615427 191 ntBASIC3.85□□□□□ -1.79
CUX1P39880 U2.11-201ENST00000616345 191 ntBASIC3.85□□□□□ -1.79
CUX1P39880 U2.2-201ENST00000616535 191 ntBASIC3.85□□□□□ -1.79
CUX1P39880 U2.3-201ENST00000617785 191 ntBASIC3.85□□□□□ -1.79
CUX1P39880 U2.19-201ENST00000618602 191 ntBASIC3.85□□□□□ -1.79
CUX1P39880 RNU2-1-201ENST00000618664 191 ntBASIC3.85□□□□□ -1.79
CUX1P39880 U2.6-201ENST00000619225 191 ntBASIC3.85□□□□□ -1.79
CUX1P39880 U2.5-201ENST00000619465 191 ntBASIC3.85□□□□□ -1.79
CUX1P39880 U2.10-201ENST00000620268 191 ntBASIC3.85□□□□□ -1.79
CUX1P39880 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
CUX1P39880 RNA5SP88-201ENST00000365560 109 ntBASIC3.84□□□□□ -1.8
CUX1P39880 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC3.84□□□□□ -1.8
CUX1P39880 AC097714.1-201ENST00000511272 1647 ntBASIC3.84□□□□□ -1.8
CUX1P39880 RNA5SP445-201ENST00000515889 115 ntBASIC3.84□□□□□ -1.8
CUX1P39880 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC3.84□□□□□ -1.8
CUX1P39880 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.84□□□□□ -1.8
CUX1P39880 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC3.84□□□□□ -1.8
CUX1P39880 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC3.84□□□□□ -1.8
CUX1P39880 MIR3186-201ENST00000577404 85 ntBASIC3.84□□□□□ -1.8
CUX1P39880 AC107294.3-201ENST00000609211 526 ntBASIC3.84□□□□□ -1.8
CUX1P39880 AC103710.2-201ENST00000609912 942 ntBASIC3.84□□□□□ -1.8
CUX1P39880 CR589904.2-201ENST00000612533 440 ntBASIC3.84□□□□□ -1.8
CUX1P39880 AC131238.1-201ENST00000617135 328 ntBASIC3.84□□□□□ -1.8
CUX1P39880 AC074140.1-201ENST00000621617 208 ntBASIC3.84□□□□□ -1.8
CUX1P39880 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC3.84□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 93.4 ms