Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC008638.3-201ENST00000603341 463 ntBASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 AL592221.1-201ENST00000605266 382 ntBASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 HSPE1P14-201ENST00000605812 302 ntBASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 AC092954.1-201ENST00000609121 445 ntBASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 AP001521.1-201ENST00000609150 300 ntBASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 ZNF37BP-203ENST00000452306 1352 ntBASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 MTCO1P24-201ENST00000515438 1558 ntBASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 AC130650.2-201ENST00000618736 2403 ntBASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC3Q9BQI4 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AC068254.2-201ENST00000623938 3577 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 MAPK10-372ENST00000641954 3413 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AC007685.1-201ENST00000329806 452 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 Y_RNA.311-201ENST00000365068 96 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 RNU6-157P-201ENST00000383957 107 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 RNU5A-2P-201ENST00000384337 116 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 TAS2R15P-201ENST00000390674 928 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 ATP5F1P4-201ENST00000397288 746 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 MIR1183-201ENST00000408856 89 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AC068533.2-201ENST00000411872 306 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AC004552.1-201ENST00000419089 348 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 RPL31P45-201ENST00000419532 356 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 MTND1P32-201ENST00000433043 938 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 HSPD1P21-201ENST00000436541 245 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 RPL29P29-201ENST00000448725 423 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 SLC31A1P1-201ENST00000451221 567 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 RPS26P3-201ENST00000470205 348 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AC090543.2-201ENST00000483963 348 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AC004057.1-201ENST00000485827 348 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AC092045.1-201ENST00000495716 1231 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 RPL31P61-201ENST00000496160 376 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AC021146.5-201ENST00000503544 545 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 TMEM248P1-201ENST00000510579 951 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 HNRNPKP5-201ENST00000515300 253 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AC090502.2-201ENST00000549267 280 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AC009712.1-201ENST00000564938 316 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AC245036.5-201ENST00000596330 847 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AL161756.2-201ENST00000604597 246 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AC007179.3-201ENST00000604976 235 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 RNA5SP108-201ENST00000605921 117 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AC080013.3-201ENST00000606839 578 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 U3.45-201ENST00000607547 219 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AC121761.2-201ENST00000617300 689 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AC233309.1-201ENST00000619522 751 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AC015967.1-201ENST00000619893 476 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 MTND4P34-201ENST00000572715 1371 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AC005539.1-201ENST00000443768 1479 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AL390862.1-201ENST00000635467 1469 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AC090337.1-201ENST00000579651 2074 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 PABPC1P7-201ENST00000413177 1513 ntBASIC3.7□□□□□ -1.82
CCDC3Q9BQI4 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 IPO8P1-201ENST00000455509 3109 ntBASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 Y_RNA.408-201ENST00000383987 102 ntBASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 SNORA51.6-201ENST00000384151 125 ntBASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 MIR124-3-201ENST00000384866 87 ntBASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 MIR199A2-201ENST00000385289 110 ntBASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 AC073264.1-201ENST00000411508 416 ntBASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 OFD1P18Y-201ENST00000420889 959 ntBASIC3.69□□□□□ -1.82
CCDC3Q9BQI4 AL139421.1-201ENST00000423010 169 ntBASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms