Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.95□□□□□ -1.46
USP3Q9Y6I4 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.95□□□□□ -1.46
USP3Q9Y6I4 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
USP3Q9Y6I4 EXOC5P1-201ENST00000510543 1969 ntBASIC5.95□□□□□ -1.46
USP3Q9Y6I4 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
USP3Q9Y6I4 Y_RNA.152-201ENST00000363578 100 ntBASIC5.95□□□□□ -1.46
USP3Q9Y6I4 RNA5SP219-201ENST00000390940 113 ntBASIC5.95□□□□□ -1.46
USP3Q9Y6I4 RNU6-550P-201ENST00000391057 101 ntBASIC5.95□□□□□ -1.46
USP3Q9Y6I4 DBIP1-201ENST00000401435 260 ntBASIC5.95□□□□□ -1.46
USP3Q9Y6I4 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
USP3Q9Y6I4 RNU2-36P-201ENST00000410361 191 ntBASIC5.95□□□□□ -1.46
USP3Q9Y6I4 RNU2-15P-201ENST00000410692 191 ntBASIC5.95□□□□□ -1.46
USP3Q9Y6I4 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC5.95□□□□□ -1.46
USP3Q9Y6I4 Z95327.2-201ENST00000414579 1873 ntBASIC5.95□□□□□ -1.46
USP3Q9Y6I4 AL356968.1-201ENST00000416622 474 ntBASIC5.95□□□□□ -1.46
USP3Q9Y6I4 AC008267.5-201ENST00000424928 265 ntBASIC5.95□□□□□ -1.46
USP3Q9Y6I4 RPL23AP69-201ENST00000431134 458 ntBASIC5.95□□□□□ -1.46
USP3Q9Y6I4 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.95□□□□□ -1.46
USP3Q9Y6I4 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.95□□□□□ -1.46
USP3Q9Y6I4 LAMTOR5P1-201ENST00000444290 270 ntBASIC5.95□□□□□ -1.46
USP3Q9Y6I4 HMGB3P21-201ENST00000452483 547 ntBASIC5.95□□□□□ -1.46
USP3Q9Y6I4 SCARNA18-201ENST00000459004 134 ntBASIC5.95□□□□□ -1.46
USP3Q9Y6I4 RN7SL72P-201ENST00000460697 269 ntBASIC5.95□□□□□ -1.46
USP3Q9Y6I4 RPS27AP1-201ENST00000475545 471 ntBASIC5.95□□□□□ -1.46
USP3Q9Y6I4 RN7SL174P-201ENST00000475578 289 ntBASIC5.95□□□□□ -1.46
USP3Q9Y6I4 COX7A2P2-201ENST00000505291 250 ntBASIC5.95□□□□□ -1.46
USP3Q9Y6I4 RNU6-798P-201ENST00000516912 103 ntBASIC5.95□□□□□ -1.46
USP3Q9Y6I4 RN7SKP40-201ENST00000517211 242 ntBASIC5.95□□□□□ -1.46
USP3Q9Y6I4 IGLV3-24-201ENST00000517477 197 ntBASIC5.95□□□□□ -1.46
USP3Q9Y6I4 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC5.95□□□□□ -1.46
USP3Q9Y6I4 RANP3-201ENST00000530970 276 ntBASIC5.95□□□□□ -1.46
USP3Q9Y6I4 AC022404.1-201ENST00000555320 273 ntBASIC5.95□□□□□ -1.46
USP3Q9Y6I4 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC5.95□□□□□ -1.46
USP3Q9Y6I4 SNORD95-201ENST00000579879 68 ntBASIC5.95□□□□□ -1.46
USP3Q9Y6I4 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC5.95□□□□□ -1.46
USP3Q9Y6I4 U2.17-201ENST00000611454 95 ntBASIC5.95□□□□□ -1.46
USP3Q9Y6I4 MIR4302-201ENST00000638058 60 ntBASIC5.95□□□□□ -1.46
USP3Q9Y6I4 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.95□□□□□ -1.46
USP3Q9Y6I4 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
USP3Q9Y6I4 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
USP3Q9Y6I4 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
USP3Q9Y6I4 AC116667.1-201ENST00000604855 2072 ntBASIC5.95□□□□□ -1.46
USP3Q9Y6I4 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
USP3Q9Y6I4 AC232271.1-201ENST00000602455 2715 ntBASIC5.95□□□□□ -1.46
USP3Q9Y6I4 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
USP3Q9Y6I4 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
USP3Q9Y6I4 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC5.95□□□□□ -1.46
USP3Q9Y6I4 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 RNA5SP242-201ENST00000364171 118 ntBASIC5.94□□□□□ -1.46
USP3Q9Y6I4 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 Y_RNA.428-201ENST00000384078 102 ntBASIC5.94□□□□□ -1.46
USP3Q9Y6I4 RNU1-136P-201ENST00000384181 164 ntBASIC5.94□□□□□ -1.46
USP3Q9Y6I4 RPL11P3-201ENST00000395256 523 ntBASIC5.94□□□□□ -1.46
USP3Q9Y6I4 RNU2-3P-201ENST00000410144 191 ntBASIC5.94□□□□□ -1.46
USP3Q9Y6I4 RNU4-61P-201ENST00000411243 107 ntBASIC5.94□□□□□ -1.46
USP3Q9Y6I4 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 E2F6P2-201ENST00000420708 748 ntBASIC5.94□□□□□ -1.46
USP3Q9Y6I4 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 AL450023.1-201ENST00000450868 751 ntBASIC5.94□□□□□ -1.46
USP3Q9Y6I4 GSTA11P-201ENST00000452866 669 ntBASIC5.94□□□□□ -1.46
USP3Q9Y6I4 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 RPL21P93-201ENST00000480465 489 ntBASIC5.94□□□□□ -1.46
USP3Q9Y6I4 RNU6-347P-201ENST00000516658 105 ntBASIC5.94□□□□□ -1.46
USP3Q9Y6I4 SNORD116.3-201ENST00000517176 78 ntBASIC5.94□□□□□ -1.46
USP3Q9Y6I4 AC105031.1-201ENST00000518550 476 ntBASIC5.94□□□□□ -1.46
USP3Q9Y6I4 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 AL049872.1-201ENST00000556323 322 ntBASIC5.94□□□□□ -1.46
USP3Q9Y6I4 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 MIR1273E-201ENST00000581165 102 ntBASIC5.94□□□□□ -1.46
USP3Q9Y6I4 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 HCG18-243ENST00000602498 327 ntTSL 3 BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 AL354984.3-201ENST00000604803 325 ntBASIC5.94□□□□□ -1.46
USP3Q9Y6I4 AC104695.2-201ENST00000605056 775 ntBASIC5.94□□□□□ -1.46
USP3Q9Y6I4 AC092608.2-201ENST00000624427 218 ntBASIC5.94□□□□□ -1.46
USP3Q9Y6I4 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC5.94□□□□□ -1.46
USP3Q9Y6I4 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.94□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms